SMTL ID : 9dtp.2 (1 other biounit)

GlfT2 from Nocardia brasiliensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.288, D.290, H.427 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.288, A:D.290, A:D.290, A:H.427 MG.5: 3 residues within 4Å: Chain B: D.288, D.290, H.427 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.288, B:D.290, B:D.290, B:H.427 MG.9: 3 residues within 4Å: Chain C: D.288, D.290, H.427 No protein-ligand interaction detected (PLIP) MG.13: 3 residues within 4Å: Chain D: D.288, D.290, H.427 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.288, D:D.290, D:D.290

4 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.2: 7 residues within 4Å: Chain A: L.476, V.558, N.561, L.562, P.610, L.614, F.617 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.476, A:V.558, A:N.561, A:L.562, A:L.614, A:F.617 TRT.6: 9 residues within 4Å: Chain B: L.475, V.558, N.561, L.562, P.610, R.611, A.613, L.614, F.617 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.475, B:L.562, B:F.617, B:F.617 TRT.10: 8 residues within 4Å: Chain C: L.476, V.558, N.561, L.562, P.610, A.613, L.614, F.617 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.476, C:V.558, C:N.561, C:L.562, C:A.613, C:L.614, C:F.617 TRT.14: 8 residues within 4Å: Chain D: L.475, L.476, N.561, L.562, P.610, A.613, L.614, F.617 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.475, D:L.562, D:A.613, D:L.614, D:F.617, D:F.617

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: W.341, F.375, K.400, W.401, D.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.401, A:D.403 GOL.4: 2 residues within 4Å: Chain A: V.464, A.628 No protein-ligand interaction detected (PLIP) GOL.7: 6 residues within 4Å: Chain B: W.341, K.400, W.401, D.403, V.404, H.444 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.401, B:D.403, B:H.444 GOL.8: 4 residues within 4Å: Chain B: I.468, R.624, K.625, A.628 No protein-ligand interaction detected (PLIP) GOL.11: 5 residues within 4Å: Chain C: W.341, K.400, W.401, D.403, H.444 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:W.401, C:D.403, C:H.444 GOL.12: 5 residues within 4Å: Chain C: K.461, V.464, V.465, I.468, K.625 No protein-ligand interaction detected (PLIP) GOL.15: 4 residues within 4Å: Chain D: W.341, W.401, D.403, V.404 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:W.341, D:D.403 GOL.16: 3 residues within 4Å: Chain D: V.464, K.625, A.628 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carter, A.W. et al., GlfT2 from Nocardia brasiliensis. To Be Published

Release Date

2025-10-08

Peptides

Galactofuranosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
E

D
H

Galactofuranosyltransferase

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