- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 14 residues within 4Å:- Chain A: Y.47, G.48, P.49, D.99, G.100, T.101, F.103, T.166, M.169, S.170, G.412, I.497
- Ligands: MG.1, AF3.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.47, A:Y.47, A:T.101, A:S.170, A:G.412
ADP.5: 17 residues within 4Å:- Chain B: L.40, D.92, G.93, T.94, T.95, S.96, T.161, S.164, S.165, G.408, G.409, N.497, V.502, E.504, R.509
- Ligands: MG.4, AF3.6
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:T.94, B:T.95, B:T.95, B:T.95, B:S.164, B:S.164, B:S.165, B:G.409, B:E.504, B:R.509
- Salt bridges: B:K.166
ADP.9: 17 residues within 4Å:- Chain C: L.52, G.53, P.54, D.104, G.105, T.107, T.172, S.175, G.422, L.462, L.494, M.501, Q.504, V.506, E.508
- Ligands: AF3.7, MG.8
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:G.53, C:G.105, C:S.175, C:S.175, C:G.422, C:E.508
ADP.11: 18 residues within 4Å:- Chain D: L.43, P.45, D.97, G.98, T.99, T.100, S.101, T.165, S.168, S.169, K.170, G.410, M.480, I.493, E.495, K.500
- Ligands: AF3.10, MG.12
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:T.99, D:T.99, D:T.100, D:S.101, D:S.101, D:S.168, D:S.168, D:S.169, D:G.410, D:E.495, D:K.500
- Salt bridges: D:K.170
ADP.14: 17 residues within 4Å:- Chain E: L.52, G.53, P.54, D.104, G.105, T.106, T.107, S.108, N.172, S.173, G.424, G.425, L.465, V.508, Q.510
- Ligands: MG.13, AF3.15
10 PLIP interactions:10 interactions with chain E- Hydrogen bonds: E:G.53, E:G.105, E:T.106, E:T.107, E:S.108, E:N.172, E:S.173, E:S.173, E:G.425, E:Q.510
ADP.18: 18 residues within 4Å:- Chain F: L.36, G.37, P.38, D.88, G.89, T.90, T.91, S.92, T.154, S.157, S.158, G.412, L.452, R.496, V.503, E.505
- Ligands: AF3.16, MG.17
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:G.89, F:T.90, F:T.91, F:S.92, F:S.157, F:S.157, F:S.158, F:G.412, F:R.496, F:E.505, F:K.510
ADP.20: 18 residues within 4Å:- Chain G: L.41, G.42, P.43, D.93, G.94, T.95, T.96, S.97, T.161, T.162, G.410, G.411, L.451, I.495, E.497, K.502
- Ligands: MG.19, AF3.21
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:G.42, G:G.94, G:T.95, G:T.96, G:S.97, G:S.97, G:T.162, G:G.411, G:K.502
ADP.23: 15 residues within 4Å:- Chain H: N.37, L.38, G.39, P.40, D.90, G.91, S.94, T.158, G.410, A.411, L.451, V.494, D.496
- Ligands: AF3.22, MG.24
6 PLIP interactions:6 interactions with chain H- Hydrogen bonds: H:G.39, H:S.94, H:S.94, H:T.158, H:A.411, H:D.496
ADP.26: 17 residues within 4Å:- Chain I: Y.47, P.49, D.99, G.100, T.101, N.102, F.103, T.166, M.169, S.170, K.171, G.412, I.482, I.497, K.504
- Ligands: AF3.25, MG.27
6 PLIP interactions:6 interactions with chain I- Hydrogen bonds: I:Y.47, I:T.101, I:F.103, I:G.412
- Salt bridges: I:K.171, I:K.504
ADP.29: 16 residues within 4Å:- Chain J: L.40, P.42, D.92, G.93, T.94, T.95, S.96, S.164, S.165, K.166, G.409, L.449, V.502, E.504
- Ligands: MG.28, AF3.30
11 PLIP interactions:11 interactions with chain J- Hydrogen bonds: J:T.94, J:T.95, J:T.95, J:T.95, J:S.164, J:S.164, J:S.165, J:G.409, J:E.504, J:R.509
- Salt bridges: J:K.166
ADP.31: 16 residues within 4Å:- Chain K: S.51, L.52, G.53, P.54, G.105, T.106, T.107, T.171, T.172, S.175, G.422, L.462, V.506, E.508
- Ligands: MG.32, AF3.33
6 PLIP interactions:6 interactions with chain K- Hydrogen bonds: K:G.53, K:G.105, K:T.106, K:S.175, K:G.422, K:E.508
ADP.34: 16 residues within 4Å:- Chain L: L.43, P.45, D.97, G.98, T.99, T.100, S.101, S.168, S.169, G.410, I.450, M.480, I.493, E.495
- Ligands: AF3.35, MG.36
12 PLIP interactions:12 interactions with chain L- Hydrogen bonds: L:T.99, L:T.100, L:S.101, L:S.168, L:S.168, L:S.169, L:G.410, L:E.495, L:K.500, L:K.500
- Salt bridges: L:K.170, L:K.170
ADP.38: 16 residues within 4Å:- Chain M: L.52, G.53, P.54, D.104, G.105, T.106, T.107, S.108, S.173, G.425, L.465, I.493, V.508, Q.510
- Ligands: AF3.37, MG.39
11 PLIP interactions:11 interactions with chain M- Hydrogen bonds: M:G.53, M:G.105, M:T.106, M:T.107, M:T.107, M:T.107, M:N.172, M:S.173, M:S.173, M:G.425, M:Q.510
ADP.40: 16 residues within 4Å:- Chain N: L.36, G.37, P.38, D.88, G.89, T.90, S.92, S.157, S.158, G.412, L.452, L.488, V.503, E.505
- Ligands: AF3.41, MG.42
10 PLIP interactions:10 interactions with chain N- Hydrogen bonds: N:S.35, N:G.37, N:G.89, N:T.90, N:S.92, N:S.157, N:S.157, N:S.158, N:G.412, N:E.505
ADP.45: 16 residues within 4Å:- Chain O: L.41, G.42, P.43, D.93, G.94, T.95, T.96, S.97, T.161, T.162, G.411, L.451, I.495, E.497
- Ligands: MG.43, AF3.44
7 PLIP interactions:7 interactions with chain O- Hydrogen bonds: O:G.42, O:G.94, O:T.95, O:S.97, O:S.97, O:G.411, O:E.497
ADP.48: 16 residues within 4Å:- Chain P: N.37, L.38, G.39, P.40, D.90, G.91, T.92, T.93, S.94, T.158, G.410, A.411, V.494, D.496
- Ligands: AF3.46, MG.47
8 PLIP interactions:8 interactions with chain P- Hydrogen bonds: P:N.37, P:G.39, P:T.92, P:S.94, P:S.94, P:S.94, P:A.411, P:D.496
- 16 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.3: 7 residues within 4Å:- Chain A: D.68, D.99, T.101, K.171, D.394
- Ligands: MG.1, ADP.2
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.68
AF3.6: 7 residues within 4Å:- Chain B: D.61, G.62, D.92, T.94, K.166
- Ligands: MG.4, ADP.5
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.61
AF3.7: 10 residues within 4Å:- Chain C: N.72, D.73, D.104, G.105, T.106, T.107, K.176, D.404
- Ligands: MG.8, ADP.9
No protein-ligand interaction detected (PLIP)AF3.10: 7 residues within 4Å:- Chain D: D.66, D.97, T.99, K.170, D.392
- Ligands: ADP.11, MG.12
No protein-ligand interaction detected (PLIP)AF3.15: 7 residues within 4Å:- Chain E: D.73, D.104, G.105, T.106, K.174
- Ligands: MG.13, ADP.14
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.73
AF3.16: 8 residues within 4Å:- Chain F: D.57, G.87, D.88, G.89, T.90, K.159
- Ligands: MG.17, ADP.18
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:D.57
AF3.21: 8 residues within 4Å:- Chain G: D.62, G.63, D.93, G.94, T.95, K.163
- Ligands: MG.19, ADP.20
No protein-ligand interaction detected (PLIP)AF3.22: 9 residues within 4Å:- Chain H: D.59, G.60, D.90, G.91, T.92, T.93, K.159
- Ligands: ADP.23, MG.24
2 PLIP interactions:2 interactions with chain H- Metal complexes: H:D.59, H:D.90
AF3.25: 9 residues within 4Å:- Chain I: D.68, A.69, D.99, G.100, T.101, N.102, K.171
- Ligands: ADP.26, MG.27
1 PLIP interactions:1 interactions with chain I- Metal complexes: I:D.68
AF3.30: 7 residues within 4Å:- Chain J: D.61, G.62, D.92, T.94, K.166
- Ligands: MG.28, ADP.29
No protein-ligand interaction detected (PLIP)AF3.33: 10 residues within 4Å:- Chain K: N.72, D.73, G.103, D.104, G.105, T.106, K.176, D.404
- Ligands: ADP.31, MG.32
No protein-ligand interaction detected (PLIP)AF3.35: 8 residues within 4Å:- Chain L: D.66, G.67, D.97, T.99, K.170, D.392
- Ligands: ADP.34, MG.36
1 PLIP interactions:1 interactions with chain L- Metal complexes: L:D.66
AF3.37: 9 residues within 4Å:- Chain M: N.72, D.73, G.74, D.104, T.106, T.107, D.407
- Ligands: ADP.38, MG.39
No protein-ligand interaction detected (PLIP)AF3.41: 9 residues within 4Å:- Chain N: N.56, D.57, D.88, G.89, T.90, K.159, D.394
- Ligands: ADP.40, MG.42
1 PLIP interactions:1 interactions with chain N- Metal complexes: N:D.57
AF3.44: 7 residues within 4Å:- Chain O: D.62, G.63, D.93, T.95, K.163
- Ligands: MG.43, ADP.45
1 PLIP interactions:1 interactions with chain O- Metal complexes: O:D.62
AF3.46: 9 residues within 4Å:- Chain P: D.59, G.60, D.90, G.91, T.92, T.93, K.159
- Ligands: MG.47, ADP.48
2 PLIP interactions:2 interactions with chain P- Metal complexes: P:D.59, P:D.90
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, Y. et al., Visualizing dynamic tubulin folding in chaperonin TRiC from nonnative nucleus to final native state. Nat Commun (2025)
- Release Date
- 2025-10-08
- Peptides
- T-complex protein 1 subunit theta: AI
T-complex protein 1 subunit eta: BJ
T-complex protein 1 subunit epsilon: CK
T-complex protein 1 subunit beta: DL
T-complex protein 1 subunit delta: EM
T-complex protein 1 subunit alpha: FN
T-complex protein 1 subunit gamma: GO
T-complex protein 1 subunit zeta: HP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BI
bB
CJ
cC
DK
dD
EL
eE
FM
fF
GN
gG
HO
hH
IP
i
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 16 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, Y. et al., Visualizing dynamic tubulin folding in chaperonin TRiC from nonnative nucleus to final native state. Nat Commun (2025)
- Release Date
- 2025-10-08
- Peptides
- T-complex protein 1 subunit theta: AI
T-complex protein 1 subunit eta: BJ
T-complex protein 1 subunit epsilon: CK
T-complex protein 1 subunit beta: DL
T-complex protein 1 subunit delta: EM
T-complex protein 1 subunit alpha: FN
T-complex protein 1 subunit gamma: GO
T-complex protein 1 subunit zeta: HP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BI
bB
CJ
cC
DK
dD
EL
eE
FM
fF
GN
gG
HO
hH
IP
i