SMTL ID : 9e7n.2 (1 other biounit)

Pfs230 D13D14 in complex with nanobody W2809

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: T.39, F.68, E.127, N.129, S.131, L.132, V.146, K.148 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.193, K.256, P.282, Y.284 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.193, A:K.256, A:P.282 Water bridges: A:Y.284 NAG.5: 3 residues within 4Å: Chain A: I.186, N.188, R.277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.186, A:N.188 NAG.6: 5 residues within 4Å: Chain A: N.182, D.183, D.184, Y.271, N.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.273

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 8 residues within 4Å: Chain A: L.79, Y.80, N.83, H.123, F.124, S.125, F.150, I.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.80, A:F.124

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: Y.219, N.223, K.262, F.263, S.264, R.277, T.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.264, A:T.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dietrich, M.H. et al., Cryo-EM structure of the native Pfs230 and Pfs48/45 fertilisation complex from Plasmodium falciparum. To Be Published

Release Date

2025-07-30

Peptides

Gametocyte surface protein P230: A
Nanobody W2809: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Gametocyte surface protein P230

Nanobody W2809

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