SMTL ID : 9ear.1

CHD1-nucleosome complex (closed state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.1: 15 residues within 4Å: Chain K: E.482, L.483, R.484, Q.487, G.513, K.514, T.515, I.516, E.550, W.554, G.872, N.874, R.902, I.903 Ligands: BEF.2 11 PLIP interactions: 11 interactions with chain K Hydrogen bonds: K:E.482, K:R.484, K:Q.487, K:G.513, K:K.514, K:T.515, K:N.874 Salt bridges: K:K.514, K:R.902, K:R.902 pi-Cation interactions: K:R.484

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 8 residues within 4Å: Chain K: M.510, G.511, K.514, G.872, I.873, R.899, R.902 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

James, A.M. et al., Structural basis of human CHD1 nucleosome recruitment and pausing. Mol.Cell (2025)

Release Date

2025-05-07

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B: DH
Chromodomain-helicase-DNA-binding protein 1: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
W

Histone H3

Histone H4

Histone H2A

Histone H2B

Chromodomain-helicase-DNA-binding protein 1

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