SMTL ID : 9emp.1

Crystal structure of Histidine acetyltransferase with N-myristoyl histidine and coenzyme A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A

COA.1: 18 residues within 4Å: Chain A: I.32, Y.33, L.83, R.84, V.85, R.90, G.91, K.92, G.93, V.94, A.95, G.96, Q.99, T.119, R.120, R.127, E.128 Ligands: 01.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.32 Hydrogen bonds: A:L.83, A:V.85, A:R.90, A:R.90, A:G.91, A:G.93, A:G.93, A:V.94, A:A.95, A:G.96, A:E.128 Water bridges: A:E.89, A:K.92

1 x 01: (2~{S})-3-(1~{H}-imidazol-5-yl)-2-(tetradecanoylamino)propanoic acid

01.2: 21 residues within 4Å: Chain A: Y.33, Y.38, E.67, V.69, V.78, V.80, E.81, G.82, L.83, Q.99, C.102, S.103, A.116, L.118, T.119, R.120, Y.132, W.205, A.326, I.328 Ligands: COA.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.80, A:L.83, A:Q.99, A:A.116, A:L.118, A:L.118, A:W.205 Hydrogen bonds: A:Y.33, A:Y.33, A:Y.38, A:G.82, A:L.83, A:T.119 Water bridges: A:R.84, A:T.119, A:W.205, A:W.205 pi-Stacking: A:W.205, A:W.205

2 x GOL: GLYCEROL

GOL.3: 6 residues within 4Å: Chain A: Y.33, G.34, L.36, L.142, V.315, K.316 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.316 Water bridges: A:D.121 GOL.4: 5 residues within 4Å: Chain A: P.296, Q.297, W.299, S.300, Y.318 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.296, A:S.300, A:S.300 Water bridges: A:W.299, A:S.300, A:Y.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myllykoski, M. et al., Human NAT16 encodes histidine alpha-acetyltransferase. To Be Published

Release Date

2025-03-19

Peptides

Probable N-acetyltransferase 16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable N-acetyltransferase 16

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