SMTL ID : 9ere.1

SLFN11 dimer bound to tRNA-Leu-TAA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: H.313, C.315, C.349, C.350 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.313, B:C.315, B:C.349, B:C.350 ZN.3: 4 residues within 4Å: Chain C: H.313, C.315, C.349, C.350 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.313, C:C.315, C:C.349, C:C.350

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain B: E.237, E.242, F.243, K.244, D.280 Chain D: U.65 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.237, B:E.242, B:F.243, B:D.280 MN.4: 7 residues within 4Å: Chain A: C.1 Chain C: E.237, E.242, F.243, K.244, D.280 Ligands: MN.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.237, C:E.242, C:F.243, C:D.280 MN.5: 4 residues within 4Å: Chain C: T.166, E.237, E.242 Ligands: MN.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:T.166, C:E.237, C:E.242, C:E.242

4 x MG: MAGNESIUM ION(Non-functional Binders)

MG.6: 2 residues within 4Å: Chain D: C.58, U.60 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain D: U.8, G.15 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain D: G.9, C.12, G.13 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain D: G.57, A.69 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kugler, M. et al., Phosphorylation-mediated conformational change regulates human SLFN11. Nat Commun (2024)

Release Date

2024-12-11

Peptides

Schlafen family member 11: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
B

Schlafen family member 11

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