SMTL ID : 9gmw.1

SLFN11 WT dimer bound to tRNA-Leu-TAA (pre-cleavage state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.313, C.315, C.349, C.350 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.313, A:C.315, A:C.349, A:C.350 ZN.3: 4 residues within 4Å: Chain B: H.313, C.315, C.349, C.350 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.313, B:C.315, B:C.349, B:C.350

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain A: E.237, E.242, F.243, K.244, D.280 Chain C: U.65 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.237, A:E.242, A:F.243, A:D.280 MN.4: 7 residues within 4Å: Chain B: E.237, E.242, F.243, K.244, D.280 Chain C: C.77 Ligands: MN.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.237, B:E.242, B:F.243, B:D.280 MN.5: 6 residues within 4Å: Chain B: E.237, E.242, D.280 Chain C: U.76, C.77 Ligands: MN.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.237, B:E.237, B:E.242

4 x MG: MAGNESIUM ION(Non-functional Binders)

MG.6: 3 residues within 4Å: Chain C: G.57, C.58, U.60 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain C: U.8, G.15 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain C: C.12, G.13 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain C: G.57, A.69 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kugler, M. et al., Phosphorylation-mediated conformational change regulates human SLFN11. Nat Commun (2024)

Release Date

2024-12-11

Peptides

Schlafen family member 11: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Schlafen family member 11

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