- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-1-1-mer
- Ligands
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 16 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN.19: 8 residues within 4Å:- Chain C: S.214, E.216, L.266, N.267, G.383, C.448, V.449, S.450
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:V.449, C:S.214
NAG-NAG-BMA-MAN.20: 8 residues within 4Å:- Chain E: S.214, E.216, L.266, N.267, G.383, V.449, S.450
- Ligands: NAG.34
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:V.449, E:S.214, E:S.214
- 27 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.21: 4 residues within 4Å:- Chain A: G.16, S.17
- Chain C: E.92, N.93
Ligand excluded by PLIPNAG.22: 3 residues within 4Å:- Chain C: N.239, T.241, S.279
Ligand excluded by PLIPNAG.23: 1 residues within 4Å:- Chain C: N.359
Ligand excluded by PLIPNAG.24: 5 residues within 4Å:- Chain C: Q.298, N.300, V.337, S.338, R.447
Ligand excluded by PLIPNAG.25: 3 residues within 4Å:- Chain C: N.306, I.327, V.445
Ligand excluded by PLIPNAG.26: 3 residues within 4Å:- Chain C: N.396
- Ligands: NAG-NAG.12, NAG-NAG.12
Ligand excluded by PLIPNAG.27: 6 residues within 4Å:- Chain C: N.367, S.368, N.390, S.392
- Ligands: NAG-NAG.12, NAG-NAG.12
Ligand excluded by PLIPNAG.28: 2 residues within 4Å:- Chain C: K.339, N.343
Ligand excluded by PLIPNAG.29: 5 residues within 4Å:- Chain C: T.133, Q.135, S.155, F.156, N.157
Ligand excluded by PLIPNAG.30: 2 residues within 4Å:- Chain D: N.126, Y.127
Ligand excluded by PLIPNAG.31: 5 residues within 4Å:- Chain E: T.133, Q.135, S.155, N.157, K.168
Ligand excluded by PLIPNAG.32: 2 residues within 4Å:- Chain E: N.138, K.152
Ligand excluded by PLIPNAG.33: 3 residues within 4Å:- Chain E: N.306, I.327, V.445
Ligand excluded by PLIPNAG.34: 4 residues within 4Å:- Chain E: N.267, P.296, N.451
- Ligands: NAG-NAG-BMA-MAN.20
Ligand excluded by PLIPNAG.35: 5 residues within 4Å:- Chain E: Q.298, N.300, V.337, S.338, R.447
Ligand excluded by PLIPNAG.36: 4 residues within 4Å:- Chain E: S.392, N.396
- Ligands: NAG-NAG.17, NAG-NAG.17
Ligand excluded by PLIPNAG.37: 6 residues within 4Å:- Chain E: N.367, S.368, N.390, S.392
- Ligands: NAG-NAG.17, NAG-NAG.17
Ligand excluded by PLIPNAG.38: 3 residues within 4Å:- Chain E: N.281, T.283, N.284
Ligand excluded by PLIPNAG.39: 3 residues within 4Å:- Chain E: R.197, N.202
- Chain F: R.313
Ligand excluded by PLIPNAG.40: 4 residues within 4Å:- Chain E: N.239, T.241, S.279, H.356
Ligand excluded by PLIPNAG.41: 4 residues within 4Å:- Chain F: N.239, T.241, S.279, H.356
Ligand excluded by PLIPNAG.42: 3 residues within 4Å:- Chain F: S.392, N.396
- Ligands: NAG-NAG.3
Ligand excluded by PLIPNAG.43: 3 residues within 4Å:- Chain F: N.306, I.327, V.445
Ligand excluded by PLIPNAG.44: 1 residues within 4Å:- Chain F: N.359
Ligand excluded by PLIPNAG.45: 3 residues within 4Å:- Chain F: K.339, N.343, W.399
Ligand excluded by PLIPNAG.46: 4 residues within 4Å:- Chain C: R.313
- Chain F: R.197, N.202, T.203
Ligand excluded by PLIPNAG.47: 5 residues within 4Å:- Chain F: Q.135, S.155, F.156, N.157, K.168
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Griffith, S. et al., TITLE: Preservation of memory B cell homeostasis in an individual producing broadly neutralizing antibodies against HIV-1. To Be Published
- Release Date
- 2025-04-16
- Peptides
- Envelope glycoprotein gp41: ABD
Envelope glycoprotein gp120: CEF
ELC07 heavy chain: G
ELC07 light chain: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
FC
CE
GF
IG
HH
L
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-1-1-mer
- Ligands
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 16 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 27 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Griffith, S. et al., TITLE: Preservation of memory B cell homeostasis in an individual producing broadly neutralizing antibodies against HIV-1. To Be Published
- Release Date
- 2025-04-16
- Peptides
- Envelope glycoprotein gp41: ABD
Envelope glycoprotein gp120: CEF
ELC07 heavy chain: G
ELC07 light chain: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
FC
CE
GF
IG
HH
L