SMTL ID : 9f0a.1

N5 Adduct of LSD1-CoREST in complex with MC4455

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.36 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: [[(2~{S},3~{R},4~{S},5~{S})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{R})-5-[5-[3-[4-[[4-[[(2~{S})-3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-2-oxidanyl-propyl]carbamoyl]pyridin-2-yl]amino]phenyl]propanoyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-4~{a}~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate

01.1: 46 residues within 4Å: Chain A: G.163, S.164, G.165, V.166, S.167, L.185, E.186, A.187, R.188, G.192, G.193, R.194, V.195, L.207, G.208, A.209, M.210, V.211, L.264, F.416, A.417, N.418, W.430, D.431, D.433, D.434, T.466, A.467, V.468, T.502, L.503, P.504, V.507, V.515, L.537, K.539, W.629, W.634, S.638, Y.639, G.678, E.679, A.687, T.688, V.689, A.692 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:V.211, A:L.264, A:F.416, A:W.430, A:W.430, A:L.537, A:W.629 Hydrogen bonds: A:G.165, A:V.166, A:S.167, A:S.167, A:S.167, A:A.187, A:R.188, A:R.194, A:A.209, A:M.210, A:V.211, A:V.211, A:V.468, A:V.468, A:E.679, A:V.689 Salt bridges: A:R.194, A:R.194 pi-Stacking: A:W.634, A:Y.639

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barone, M. et al., N5 Adduct of LSD1-CoREST in complex with MC4455. To Be Published

Release Date

2025-04-23

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine-specific histone demethylase 1A

REST corepressor 1

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