SMTL ID : 9f0o.1

The molecular basis and modulation of lamin-specific chromatin interaction

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x ALA- GLU- TYR- ASN- LEU- ARG- SER- ARG: laminA_peptide(Non-covalent)

ALA-GLU-TYR-ASN-LEU-ARG-SER-ARG.1: 16 residues within 4Å: Chain G: Q.15, E.47, Y.48, A.51, E.52, E.55, D.81, E.83, L.84 Chain H: V.16, V.20, E.77, L.78, H.81, S.84, E.85 17 PLIP interactions: 10 interactions with chain G, 7 interactions with chain H Hydrophobic interactions: G:E.47, G:Y.48, G:E.55, H:V.20 Hydrogen bonds: G:Y.48, G:E.52, G:E.55, H:V.20, H:V.20, H:H.81, H:S.84, H:S.84, H:E.85 Salt bridges: G:E.52, G:E.55, G:D.81, G:E.83 ALA-GLU-TYR-ASN-LEU-ARG-SER-ARG.2: 17 residues within 4Å: Chain C: Q.15, E.47, Y.48, A.51, E.52, E.55, D.81, E.83, L.84 Chain D: V.16, V.20, E.77, L.78, H.81, S.84, E.85, K.88 15 PLIP interactions: 9 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:E.47, C:E.52, C:E.55, D:V.20 Hydrogen bonds: C:Y.48, C:E.52, C:E.55, D:H.81, D:S.84, D:S.84, D:E.85, D:K.88 Salt bridges: C:E.52, C:D.81, C:E.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, B. et al., The molecular basis of lamin-specific chromatin interactions. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-08-13

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B 1.1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B 1.1

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