SMTL ID : 9f7v.2 (1 other biounit)

N-acetylglucosamine 6-phosphate dehydratase: GlcNAc6P substrate-bound state of NagS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.19, R.22 Chain B: R.19 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.19, A:R.22 Hydrogen bonds: B:R.19 SO4.3: 3 residues within 4Å: Chain A: R.19 Chain B: R.19, R.22 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.19, B:R.22 Hydrogen bonds: A:R.19

2 x 16G: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose(Non-covalent)

16G.2: 23 residues within 4Å: Chain A: A.51, G.52, H.53, S.54, I.82, S.91, E.94, S.119, L.120, S.121, G.122, N.124, P.127 Chain B: Y.63, R.64, A.65, L.224, R.225, S.226, G.227, N.228, H.233, N.236 19 PLIP interactions: 15 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:H.53, A:S.54, A:S.54, A:S.91, A:E.94, A:E.94, A:S.119, A:L.120, A:S.121, A:S.121, B:Y.63, B:G.227, B:N.228 Water bridges: A:S.54, A:S.54, A:N.124, A:N.124, B:A.65 Salt bridges: A:H.53 16G.4: 23 residues within 4Å: Chain A: Y.63, R.64, A.65, L.224, R.225, S.226, G.227, N.228, H.233, N.236 Chain B: A.51, G.52, H.53, S.54, I.82, S.91, E.94, S.119, L.120, S.121, G.122, N.124, P.127 20 PLIP interactions: 16 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:H.53, B:S.54, B:S.54, B:S.91, B:E.94, B:E.94, B:S.119, B:L.120, B:S.121, B:S.121, A:Y.63, A:G.227, A:N.228 Water bridges: B:S.54, B:S.54, B:E.94, B:N.124, B:D.179, A:A.65 Salt bridges: B:H.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, C. et al., A new pathway in central metabolism mediates nutrient control of development and antibiotic production by Streptomyces. Biorxiv (2024)

Release Date

2025-02-19

Peptides

UPF0309 protein SCO4393: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

UPF0309 protein SCO4393

Related Entries With Identical Sequence