SMTL ID : 9f8m.2 (1 other biounit)

Crystal Structure of PhzA/B from Burkholderia cepacia R18194 in complex with [6-Hydroxy-2-(4-hydroxyphenyl)benzo[b]thiophen-3-yl][4-(propylamino)phenyl]methanone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: R.58, L.73, S.97, F.101, W.104, W.106, Y.140, F.144, E.160 Ligands: 01.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.97, A:S.97, A:E.160, A:E.160 Water bridges: A:R.61, A:R.61, A:R.61, A:R.61 GOL.3: 10 residues within 4Å: Chain B: R.58, L.73, S.97, F.101, W.104, W.106, Y.140, F.144, E.160 Ligands: 01.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.97, B:S.97, B:E.160, B:E.160, B:E.160 Water bridges: B:R.61, B:R.61, B:R.61

2 x 01: [2-(4-hydroxyphenyl)-6-oxidanyl-1-benzothiophen-3-yl]-[4-(propylamino)phenyl]methanone

01.2: 26 residues within 4Å: Chain A: R.61, G.71, G.72, L.73, T.76, D.77, I.82, A.83, I.84, L.90, H.93, W.96, C.100, F.101, F.132, E.160, M.162, P.164, Q.167, F.168 Chain B: V.178, R.180, L.183, P.184, S.185 Ligands: GOL.1 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.73, A:L.73, A:I.82, A:I.84, A:F.132, B:V.178 Hydrogen bonds: A:D.77, A:D.77, A:D.77, A:Q.167 Water bridges: A:E.160 pi-Stacking: A:F.132 01.4: 26 residues within 4Å: Chain A: V.178, R.180, L.183, P.184, S.185 Chain B: R.61, G.71, G.72, L.73, T.76, D.77, I.82, A.83, I.84, L.90, H.93, W.96, C.100, F.101, F.132, E.160, M.162, P.164, Q.167, F.168 Ligands: GOL.3 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.73, B:L.73, B:I.82, B:I.82, B:I.84, B:F.132, A:V.178, A:L.183, A:L.183 Hydrogen bonds: B:L.73, B:D.77, B:D.77, B:H.93, B:Q.167 Water bridges: B:E.160 pi-Stacking: B:F.132

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 8 residues within 4Å: Chain A: R.40, E.113, T.114, Q.115 Chain B: R.40, E.113, T.114, Q.115 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.113, B:E.113, B:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thiemann, M. et al., From Bones to Bugs: Structure-Based Development of Raloxifene-Derived Pathoblockers That Inhibit Pyocyanin Production in Pseudomonas aeruginosa. J.Med.Chem. (2025)

Release Date

2025-04-16

Peptides

Phenazine biosynthesis protein A/B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Phenazine biosynthesis protein A/B

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