SMTL ID : 9f92.1

Complex of phenazine biosynthesis enzyme PhzF with 2-amino-3-nitrobenzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: A.92, G.93, H.94, P.95, A.230, T.231, G.232, S.233 Ligands: 01.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.93, A:H.94, A:A.230, A:G.232, A:S.233, A:S.233, A:S.233 Water bridges: A:N.38, A:H.94, A:H.175, A:H.175 Salt bridges: A:H.94 SO4.2: 2 residues within 4Å: Chain A: H.110, R.111 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.110, A:R.111 SO4.3: 4 residues within 4Å: Chain A: N.74, G.76, E.115, T.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.120 Water bridges: A:T.120, A:T.120 SO4.6: 9 residues within 4Å: Chain B: A.92, G.93, H.94, P.95, A.230, T.231, G.232, S.233 Ligands: 01.9 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.93, B:H.94, B:A.230, B:G.232, B:S.233, B:S.233, B:S.233 Water bridges: B:N.38, B:H.94, B:H.175, B:H.175 Salt bridges: B:H.94 SO4.7: 2 residues within 4Å: Chain B: H.110, R.111 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.110, B:R.111 SO4.8: 4 residues within 4Å: Chain B: N.74, G.76, E.115, T.120 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.120 Water bridges: B:T.120, B:T.120

2 x 01: 2-azanyl-3-nitro-benzoic acid

01.4: 9 residues within 4Å: Chain A: E.65, L.89, P.90, F.91, A.92, G.172, P.173, Y.223 Ligands: SO4.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.89, A:P.173, A:Y.223, A:Y.223 Hydrogen bonds: A:F.91, A:F.91, A:F.91 01.9: 9 residues within 4Å: Chain B: E.65, L.89, P.90, F.91, A.92, G.172, P.173, Y.223 Ligands: SO4.6 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.89, B:P.173, B:Y.223, B:Y.223 Hydrogen bonds: B:F.91, B:F.91, B:F.91

2 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.5: 3 residues within 4Å: Chain A: R.73, L.79, Q.117 No protein-ligand interaction detected (PLIP) BU3.10: 3 residues within 4Å: Chain B: R.73, L.79, Q.117 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumgarten, J. et al., Substrate-Based Ligand Design for Phenazine Biosynthesis Enzyme PhzF. Chemmedchem (2024)

Release Date

2024-10-09

Peptides

Trans-2,3-dihydro-3-hydroxyanthranilate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Trans-2,3-dihydro-3-hydroxyanthranilate isomerase

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