SMTL ID : 9f94.1

Complex of phenazine biosynthesis enzyme PhzF with 2-amino-5-(3-hydroxyphenyl)benzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 7 residues within 4Å: Chain A: K.155, A.156, L.157, G.158, H.190, P.191, D.192 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.155 Water bridges: A:D.192 FMT.4: 7 residues within 4Å: Chain B: K.155, A.156, L.157, G.158, H.190, P.191, D.192 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.155

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: I.121, D.138, Q.139, P.140 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.140 Water bridges: A:D.138 ACT.5: 4 residues within 4Å: Chain B: I.121, D.138, Q.139, P.140 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.140

2 x 01: 2-azanyl-5-(3-hydroxyphenyl)benzoic acid

01.3: 15 residues within 4Å: Chain A: S.64, E.65, T.84, L.89, P.90, F.91, A.92, G.93, H.94, P.95, G.172, P.173, D.201, Y.223, S.233 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.89, A:L.89, A:A.92, A:P.173, A:Y.223 Hydrogen bonds: A:F.91, A:G.93, A:G.172, A:S.233 Water bridges: A:H.94, A:H.94, A:S.233 pi-Stacking: A:Y.223 01.6: 15 residues within 4Å: Chain B: S.64, E.65, T.84, L.89, P.90, F.91, A.92, G.93, H.94, P.95, G.172, P.173, D.201, Y.223, S.233 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.89, B:L.89, B:A.92, B:P.173, B:Y.223 Hydrogen bonds: B:F.91, B:G.93, B:G.172, B:S.233 Water bridges: B:H.94, B:H.94, B:S.233 pi-Stacking: B:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumgarten, J. et al., Substrate-Based Ligand Design for Phenazine Biosynthesis Enzyme PhzF. Chemmedchem (2024)

Release Date

2024-10-09

Peptides

Trans-2,3-dihydro-3-hydroxyanthranilate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Trans-2,3-dihydro-3-hydroxyanthranilate isomerase

Related Entries With Identical Sequence