SMTL ID : 9fpp.1 (1 other biounit)

FGD2 (Rv0132c) from Mycobacterium tuberculosis with cofactor F420 crystallised with Anderson-Evans polyoxotungstate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

4 x TEW: 6-tungstotellurate(VI)(Non-covalent)

TEW.1: 6 residues within 4Å: Chain A: E.154, R.155, K.169 Chain B: N.264, V.266, R.270 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.155, A:R.155, A:K.169, B:N.264, B:R.270 Water bridges: A:K.169 TEW.2: 7 residues within 4Å: Chain A: R.120, G.131, N.132, Y.133, R.136 Ligands: TEW.3, IMD.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.120, A:Y.133, A:R.136, A:R.136 TEW.3: 8 residues within 4Å: Chain A: Y.133, S.185, G.186, P.187, Q.188, S.189 Ligands: TEW.2, IMD.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.188, A:Q.188, A:S.189 TEW.7: 4 residues within 4Å: Chain B: D.242, K.244, A.245, R.248 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.244, B:K.244, B:R.248, B:R.248

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 3 residues within 4Å: Chain A: Y.133 Ligands: TEW.2, TEW.3 No protein-ligand interaction detected (PLIP)

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 7 residues within 4Å: Chain B: W.54, Q.203, E.235, F.237, W.253, F.255 Ligands: F42.6 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.54, B:Q.203, B:F.237, B:W.253, B:F.255, B:F.255 Hydrogen bonds: B:Q.203, B:Q.203

1 x F42: COENZYME F420(Non-covalent)

F42.6: 24 residues within 4Å: Chain B: S.48, D.49, H.50, G.83, V.84, C.86, G.116, T.117, G.118, E.119, N.122, N.132, Y.133, A.183, A.184, S.185, G.186, P.187, Q.188, S.189, I.201, Q.203, E.235 Ligands: MPD.5 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:V.84, B:Y.133, B:Y.133, B:A.183, B:I.201 Hydrogen bonds: B:D.49, B:D.49, B:V.84, B:C.86, B:T.117, B:G.118, B:G.118, B:N.122, B:Y.133, B:S.185, B:G.186, B:Q.188, B:Q.188, B:S.189, B:S.189, B:S.189, B:Q.203 Water bridges: B:R.90, B:R.90, B:R.90, B:T.117, B:T.117, B:A.184, B:A.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aderemi, A. et al., FGD2 (Rv0132c) from Mycobacterium tuberculosis with cofactor F420 crystallised with Anderson-Evans polyoxotungstate. To Be Published

Release Date

2025-06-25

Peptides

F420-dependent hydroxymycolic acid dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F420-dependent hydroxymycolic acid dehydrogenase

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