SMTL ID : 9fpp.2 (1 other biounit)

FGD2 (Rv0132c) from Mycobacterium tuberculosis with cofactor F420 crystallised with Anderson-Evans polyoxotungstate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

3 x TEW: 6-tungstotellurate(VI)(Covalent)(Non-covalent)

TEW.1: 7 residues within 4Å: Chain A: N.57, R.248, D.251, L.252, R.254, Q.269, E.273 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.57, A:R.248, A:R.254, A:Q.269, A:E.273 Water bridges: A:Q.55 Metal complexes: A:D.251, A:D.251, A:D.251, A:E.273, A:E.273 TEW.2: 1 residues within 4Å: Chain A: R.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.26, A:R.26 TEW.3: 7 residues within 4Å: Chain A: Y.133, S.185, G.186, P.187, Q.188, S.189 Ligands: IMD.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.185, A:G.186, A:Q.188, A:Q.188, A:S.189

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 2 residues within 4Å: Chain A: Y.133 Ligands: TEW.3 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:Y.133

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 5 residues within 4Å: Chain B: W.54, Q.203, E.235, F.255 Ligands: F42.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Q.203, B:F.255 Hydrogen bonds: B:Q.203, B:Q.203

1 x F42: COENZYME F420(Non-covalent)

F42.6: 25 residues within 4Å: Chain B: S.48, D.49, H.50, G.83, V.84, C.86, G.116, T.117, G.118, E.119, N.122, N.132, Y.133, A.183, A.184, S.185, G.186, P.187, Q.188, S.189, I.201, A.202, Q.203, E.235 Ligands: MPD.5 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:V.84, B:A.183, B:I.201 Hydrogen bonds: B:D.49, B:D.49, B:V.84, B:G.118, B:G.118, B:E.119, B:N.122, B:Y.133, B:S.185, B:G.186, B:Q.188, B:S.189, B:S.189, B:Q.203 Water bridges: B:C.86, B:T.117, B:T.117, B:T.117, B:R.134, B:R.136, B:A.184, B:A.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aderemi, A. et al., FGD2 (Rv0132c) from Mycobacterium tuberculosis with cofactor F420 crystallised with Anderson-Evans polyoxotungstate. To Be Published

Release Date

2025-06-25

Peptides

F420-dependent hydroxymycolic acid dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

F420-dependent hydroxymycolic acid dehydrogenase

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