SMTL ID : 9fql.1 (2 other biounits)

Crystal structure of hDM2 in complex with a peptidic ligand containing a di-urea insert.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: A.19, Q.20, K.21, Y.24, Y.32 Chain C: T.1 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain A Hydrogen bonds: C:T.1, C:T.1, A:Q.20, A:K.21, A:Y.32 Water bridges: C:T.1, C:S.2 Salt bridges: A:K.21 PO4.2: 6 residues within 4Å: Chain B: A.19, Q.20, K.21, Y.24, Y.32 Chain D: T.1 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain B Hydrogen bonds: D:T.1, D:T.1, D:T.1, B:Q.20, B:K.21, B:Y.24 Water bridges: D:S.2, B:Y.32, B:Y.32 PO4.3: 2 residues within 4Å: Chain B: S.54, N.55 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.54, B:N.55 PO4.4: 3 residues within 4Å: Chain B: K.70 Chain C: T.1, Y.6 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.1, C:T.1 Water bridges: C:T.1 Salt bridges: B:K.70 PO4.5: 3 residues within 4Å: Chain A: K.70 Chain D: T.1, Y.6 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:T.1, D:Y.6, D:Y.6, D:Y.6 Salt bridges: A:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buratto, J. et al., Crystal structure of hDM2 in complex with a peptidic ligand containing a di-urea insert. To Be Published

Release Date

2025-07-02

Peptides

E3 ubiquitin-protein ligase Mdm2: AB
p25Lp26A: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E3 ubiquitin-protein ligase Mdm2

p25Lp26A

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