SMTL ID : 9fql.3 (2 other biounits)

Crystal structure of hDM2 in complex with a peptidic ligand containing a di-urea insert.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: A.19, Q.20, K.21, Y.32 Chain D: T.1 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain D Hydrogen bonds: A:Q.20, A:K.21, A:Y.32, D:T.1, D:T.1 Water bridges: A:E.28, D:T.1, D:T.1, D:S.2 PO4.2: 1 residues within 4Å: Chain A: N.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.55 Water bridges: A:N.55, A:N.55 PO4.3: 3 residues within 4Å: Chain A: K.70 Chain B: T.1, Y.6 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.1, B:Y.6 Salt bridges: A:K.70 PO4.4: 6 residues within 4Å: Chain B: T.1 Chain C: A.19, Q.20, K.21, Y.24, Y.32 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:T.1, B:T.1, C:Q.20, C:K.21, C:Y.24, C:Y.24 Water bridges: B:S.2 Salt bridges: C:K.21 PO4.5: 3 residues within 4Å: Chain C: K.70 Chain D: T.1, Y.6 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:T.1, D:Y.6, D:Y.6 Salt bridges: C:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buratto, J. et al., Crystal structure of hDM2 in complex with a peptidic ligand containing a di-urea insert. To Be Published

Release Date

2025-07-02

Peptides

E3 ubiquitin-protein ligase Mdm2: AC
p25Lp26A: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

C
J

B
K

D
L

E3 ubiquitin-protein ligase Mdm2

p25Lp26A

Related Entries With Identical Sequence