- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 2 residues within 4Å:- Chain A: N.284, E.287
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.287
- Hydrogen bonds: A:N.284
NAG.6: 2 residues within 4Å:- Chain A: N.32, T.34
No protein-ligand interaction detected (PLIP)NAG.21: 2 residues within 4Å:- Chain B: S.36, N.284
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.36, B:S.36, B:N.284
NAG.22: 1 residues within 4Å:- Chain B: N.32
No protein-ligand interaction detected (PLIP)- 17 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)(Covalent)
PLC.7: 7 residues within 4Å:- Chain A: L.26, R.27, L.28, L.47, G.50, L.51, A.54
Ligand excluded by PLIPPLC.8: 10 residues within 4Å:- Chain A: W.13, V.107, Q.388, L.391, Y.392, G.394, L.395
- Ligands: CLR.9, PLC.20, PLC.32
Ligand excluded by PLIPPLC.11: 15 residues within 4Å:- Chain A: P.37, G.38, A.129, V.195, F.281, I.282, V.285, T.286, I.290, Y.298, L.299, L.371, A.378
- Ligands: CLR.12, CLR.13
Ligand excluded by PLIPPLC.16: 8 residues within 4Å:- Chain A: Y.208, Y.212, S.216, L.219, L.220, L.256
- Ligands: CPL.15, PLC.17
Ligand excluded by PLIPPLC.17: 7 residues within 4Å:- Chain A: L.46, G.50, L.256, A.259, S.266
- Ligands: CPL.14, PLC.16
Ligand excluded by PLIPPLC.18: 12 residues within 4Å:- Chain A: F.109, Y.211, W.214, L.215, L.218, I.222, L.225, V.226, L.229
- Ligands: PLC.19, PLC.26, PLC.27
Ligand excluded by PLIPPLC.19: 2 residues within 4Å:- Ligands: PLC.18, PLC.26
Ligand excluded by PLIPPLC.20: 6 residues within 4Å:- Chain A: W.13, W.17, L.395, F.398
- Ligands: PLC.8, CLR.10
Ligand excluded by PLIPPLC.24: 8 residues within 4Å:- Chain B: G.50, A.259, A.263, S.266
- Ligands: PLC.25, PLC.29, PLC.33, PLC.34
Ligand excluded by PLIPPLC.25: 8 residues within 4Å:- Chain B: L.26, L.28, G.50, L.51, A.54, V.55, C.56
- Ligands: PLC.24
Ligand excluded by PLIPPLC.26: 8 residues within 4Å:- Chain B: W.13, W.17, V.107, Y.392, L.395
- Ligands: PLC.18, PLC.19, PLC.27
Ligand excluded by PLIPPLC.27: 8 residues within 4Å:- Chain B: W.13, W.14, Y.110, Q.388, L.391, Y.392
- Ligands: PLC.18, PLC.26
Ligand excluded by PLIPPLC.28: 8 residues within 4Å:- Chain B: F.35, P.37, G.38, Q.43, Q.205, E.210
- Ligands: CPL.23, PLC.34
Ligand excluded by PLIPPLC.29: 6 residues within 4Å:- Chain B: E.40, Q.43, L.46, S.266
- Ligands: PLC.24, PLC.34
Ligand excluded by PLIPPLC.32: 10 residues within 4Å:- Chain A: G.106, Y.110
- Chain B: C.102, F.109, N.116, Y.120, W.214, L.225, L.229
- Ligands: PLC.8
Ligand excluded by PLIPPLC.33: 12 residues within 4Å:- Chain B: Y.211, Y.212, L.215, S.216, L.218, L.219, L.220, I.222, L.223, L.256
- Ligands: PLC.24, PLC.34
Ligand excluded by PLIPPLC.34: 19 residues within 4Å:- Chain B: D.204, Q.205, Y.208, V.209, Y.212, R.213, S.216, Y.217, L.220, L.256, S.260, A.263, D.264, A.267, L.390
- Ligands: PLC.24, PLC.28, PLC.29, PLC.33
Ligand excluded by PLIP- 6 x CLR: CHOLESTEROL(Non-covalent)
CLR.9: 8 residues within 4Å:- Chain A: V.24, L.28, F.48, L.49, V.52, V.269
- Ligands: PLC.8, CLR.10
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.24, A:L.28, A:F.48, A:F.48, A:L.49, A:V.52, A:V.269
CLR.10: 8 residues within 4Å:- Chain A: W.13, W.14, W.17, L.18, P.22, L.391
- Ligands: CLR.9, PLC.20
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.13, A:W.14, A:W.17, A:W.17, A:L.18, A:L.18, A:L.391
CLR.12: 9 residues within 4Å:- Chain A: L.202, Q.205, T.206, V.209, E.210, R.213
- Ligands: PLC.11, CLR.13, CPL.15
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.202, A:V.209
CLR.13: 10 residues within 4Å:- Chain A: F.35, P.37, Q.43, A.270, T.271, F.274, I.382
- Ligands: PLC.11, CLR.12, CPL.14
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.35, A:Q.43, A:A.270, A:F.274, A:F.274, A:I.382
CLR.30: 7 residues within 4Å:- Chain B: W.14, W.17, S.20, V.21, P.22, L.391
- Ligands: CLR.31
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.14, B:W.17, B:L.391
CLR.31: 6 residues within 4Å:- Chain B: V.21, V.24, L.28, F.48, L.49
- Ligands: CLR.30
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:V.21, B:V.24, B:L.28, B:L.49
- 3 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
CPL.14: 13 residues within 4Å:- Chain A: L.26, R.27, E.40, Q.43, E.44, L.46, L.47, A.263, S.266, A.267
- Ligands: CLR.13, CPL.15, PLC.17
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.44, A:L.46, A:L.47
CPL.15: 15 residues within 4Å:- Chain A: D.204, Q.205, Y.208, V.209, Y.212, R.213, Y.217, L.256, S.260, D.264, A.267, L.390
- Ligands: CLR.12, CPL.14, PLC.16
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.209, A:Y.212, A:Y.217, A:A.267, A:L.390
CPL.23: 18 residues within 4Å:- Chain B: P.37, G.38, L.126, A.129, L.202, F.274, N.284, V.285, T.286, I.290, T.295, Y.298, L.299, L.371, D.374, Y.375, A.378
- Ligands: PLC.28
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:P.37, B:L.126, B:A.129, B:F.274, B:T.286, B:I.290, B:T.295, B:L.299, B:D.374, B:Y.375, B:Y.375
- Hydrogen bonds: B:G.38
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sukalskaia, A. et al., Interactions between TTYH2 and APOE facilitate endosomal lipid transfer. Nature (2025)
- Release Date
- 2025-05-21
- Peptides
- Protein tweety homolog 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 17 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)(Covalent)
- 6 x CLR: CHOLESTEROL(Non-covalent)
- 3 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sukalskaia, A. et al., Interactions between TTYH2 and APOE facilitate endosomal lipid transfer. Nature (2025)
- Release Date
- 2025-05-21
- Peptides
- Protein tweety homolog 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.