SMTL ID : 9h7r.1

MITF in complex with 6-((1-hydroxycyclohexyl)ethynyl)-1-phenyl-1H-indole-2-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

homo-trimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: I.18, P.19, K.20, S.21, N.22 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.18, A:K.20, A:S.21, A:N.22, A:N.22 Water bridges: A:D.23 SO4.2: 2 residues within 4Å: Chain A: R.71 Chain B: Q.73 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.73 Water bridges: A:R.71, A:R.71 Salt bridges: A:R.71 SO4.3: 4 residues within 4Å: Chain A: K.43, R.46, E.47, R.50 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.47, A:E.47, A:R.50 Salt bridges: A:K.43, A:R.46 SO4.5: 2 residues within 4Å: Chain B: R.71 Chain C: Q.73 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:Q.73 Water bridges: B:R.71 Salt bridges: B:R.71 SO4.6: 1 residues within 4Å: Chain B: R.71 3 PLIP interactions: 3 interactions with chain B Water bridges: B:H.67 Salt bridges: B:H.67, B:R.71

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: H.63, A.64, H.67 Chain B: N.65, L.69 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.65, A:H.63 Water bridges: B:N.65 PEG.8: 4 residues within 4Å: Chain B: A.64, L.68 Chain C: R.66, L.69 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Water bridges: B:R.71, C:N.65 PEG.9: 3 residues within 4Å: Chain B: E.74, L.75, Q.78 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.74

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 3 residues within 4Å: Chain B: G.15, I.18, K.20 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.18

1 x 01: 6-[2-(1-oxidanylcyclohexyl)ethynyl]-1-phenyl-indole-2-carboxylic acid

01.10: 13 residues within 4Å: Chain A: L.44, E.47, Q.48, A.51 Chain B: L.44, E.47, Q.48, A.51, K.52, E.55 Chain C: R.50, A.51, L.54 12 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:E.47, B:Q.48, B:Q.48, B:A.51, B:K.52, A:E.47, A:Q.48, A:A.51, C:A.51, C:L.54 Salt bridges: B:K.52 Hydrogen bonds: A:E.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jahnke, W. et al., MITF in complex with 6-((1-hydroxycyclohexyl)ethynyl)-1-phenyl-1H-indole-2-carboxylic acid. To Be Published

Release Date

2025-11-05

Peptides

Isoform M1 of Microphthalmia-associated transcription factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Isoform M1 of Microphthalmia-associated transcription factor

Related Entries With Identical Sequence