SMTL ID : 9h7s.1

MITF in complex with 1-(3-chlorophenyl)-6-((1-hydroxycyclohexyl)ethynyl)-1H-indole-2-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-trimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.43, R.46, E.47, R.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.43 Salt bridges: A:K.43, A:R.46, A:R.50 SO4.2: 3 residues within 4Å: Chain A: K.20, S.21, N.22 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.20, A:N.22, A:N.22 SO4.3: 2 residues within 4Å: Chain A: R.71 Chain B: Q.73 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Water bridges: A:H.67, A:R.71 Salt bridges: A:R.71 Hydrogen bonds: B:Q.73 SO4.6: 2 residues within 4Å: Chain B: R.71 Chain C: Q.73 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Water bridges: B:R.71 Salt bridges: B:R.71 Hydrogen bonds: C:Q.73 SO4.7: 2 residues within 4Å: Chain B: H.67, R.71 5 PLIP interactions: 5 interactions with chain B Water bridges: B:H.67, B:H.67, B:R.71 Salt bridges: B:H.67, B:R.71

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 6 residues within 4Å: Chain A: H.63, A.64, H.67 Chain B: N.65, R.66, L.69 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.63, B:N.65 Water bridges: B:N.65 PEG.8: 5 residues within 4Å: Chain B: A.64, L.68 Chain C: N.65, R.66, L.69 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.71

1 x 01: 1-(3-chlorophenyl)-6-[2-(1-oxidanylcyclohexyl)ethynyl]indole-2-carboxylic acid

01.5: 13 residues within 4Å: Chain A: L.44, E.47, Q.48, A.51 Chain B: L.44, E.47, Q.48, A.51, K.52, L.54, E.55 Chain C: A.51, L.54 14 PLIP interactions: 1 interactions with chain C, 7 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: C:L.54, A:E.47, A:Q.48, A:Q.48, A:A.51, B:L.44, B:E.47, B:Q.48, B:K.52 Hydrogen bonds: A:E.47, A:E.47, A:Q.48, B:Q.48, B:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jahnke, W. et al., MITF in complex with 1-(phenylethynyl)cyclohexan-1-ol. To Be Published

Release Date

2025-11-05

Peptides

Isoform M1 of Microphthalmia-associated transcription factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Isoform M1 of Microphthalmia-associated transcription factor

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