SMTL ID : 9i2z.2 (5 other biounits)

Alpha-Methylacyl-CoA racemase from Mycobacterium tuberculosis in complex with 2-methyldecanoyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x 01: (S)-2-methyldecanoyl-CoA

01.1: 25 residues within 4Å: Chain A: I.16, G.17, R.38, A.59, D.60, L.61, K.62, G.83, Y.84, R.85, V.88, R.91, L.92, G.113, A.124, G.125, H.126, D.127, Y.130, N.152, D.156, M.188 Chain B: M.198, L.217, F.244 22 PLIP interactions: 2 interactions with chain B, 20 interactions with chain A Hydrophobic interactions: B:L.217, B:F.244, A:I.16, A:A.124, A:N.152 Hydrogen bonds: A:R.38, A:A.59, A:D.60, A:L.61, A:G.83, A:G.83, A:R.85, A:D.127, A:Y.130 Water bridges: A:I.16, A:R.91, A:R.91 Salt bridges: A:K.62, A:R.85, A:R.85, A:R.91 pi-Cation interactions: A:R.38 01.2: 25 residues within 4Å: Chain A: M.198, L.217, Y.224, F.244 Chain B: I.16, G.17, R.38, A.59, D.60, L.61, K.62, G.83, Y.84, R.85, V.88, R.91, T.112, G.113, A.124, G.125, H.126, D.127, Y.130, N.152, D.156 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:I.16, B:A.124, A:L.217, A:F.244 Hydrogen bonds: B:R.38, B:R.38, B:A.59, B:L.61, B:G.83, B:R.85, B:R.91, B:D.127, B:Y.130, B:Y.130 Water bridges: B:I.16, B:Y.84, B:R.85 Salt bridges: B:K.62, B:R.85, B:R.85, B:R.91 pi-Cation interactions: B:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mojanaga, O.O. et al., Molecular basis of acyl-CoA ester recognition by alpha-methylacyl-CoA racemase from Mycobacterium tuberculosis. J.Biol.Chem. (2025)

Release Date

2025-06-11

Peptides

Alpha-methylacyl-CoA racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Alpha-methylacyl-CoA racemase

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