SMTL ID : 9i36.4 (5 other biounits)

Alpha-Methylacyl-CoA racemase from Mycobacterium tuberculosis in complex with decanoyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

2 x MFK: decanoyl-CoA(Non-covalent)

MFK.1: 26 residues within 4Å: Chain A: I.16, G.17, R.38, A.59, D.60, L.61, K.62, G.83, Y.84, R.85, V.88, R.91, L.92, G.113, A.124, G.125, H.126, D.127, Y.130, N.152, D.156 Chain B: M.198, M.207, M.216, Y.224, F.244 20 PLIP interactions: 19 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.124 Hydrogen bonds: A:R.38, A:A.59, A:D.60, A:L.61, A:K.62, A:G.83, A:G.83, A:R.85, A:G.125, A:H.126, A:D.127, B:Y.224 Water bridges: A:I.16, A:R.91 Salt bridges: A:K.62, A:R.85, A:R.85, A:R.91 pi-Cation interactions: A:R.38 MFK.2: 26 residues within 4Å: Chain A: M.207, M.216, I.240, F.244 Chain B: I.16, P.18, D.37, R.38, D.48, A.59, D.60, L.61, K.62, G.83, Y.84, R.85, V.88, R.91, L.92, G.113, A.124, G.125, H.126, D.127, Y.130, D.156 19 PLIP interactions: 1 interactions with chain A, 18 interactions with chain B Hydrophobic interactions: A:I.240, B:A.124 Hydrogen bonds: B:R.38, B:R.38, B:A.59, B:L.61, B:K.62, B:G.83, B:G.83, B:R.85, B:H.126, B:D.127, B:Y.130 Water bridges: B:I.16 Salt bridges: B:K.62, B:R.85, B:R.85, B:R.91 pi-Cation interactions: B:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mojanaga, O.O. et al., Molecular basis of acyl-CoA ester recognition by alpha-methylacyl-CoA racemase from Mycobacterium tuberculosis. J.Biol.Chem. (2025)

Release Date

2025-06-11

Peptides

Alpha-methylacyl-CoA racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Alpha-methylacyl-CoA racemase

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