SMTL ID : 9inv.1

Crystal structure of DAPK1 in complex with isoliquiritigenin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x HCC: 2',4,4'-TRIHYDROXYCHALCONE(Non-covalent)

HCC.1: 15 residues within 4Å: Chain A: L.19, G.20, S.21, G.22, A.25, V.27, A.40, K.42, I.77, E.94, L.95, V.96, M.146, I.160, D.161 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.19, A:L.19, A:V.27, A:V.27, A:A.40, A:I.77, A:I.160 Hydrogen bonds: A:S.21, A:E.94, A:V.96 Water bridges: A:F.24, A:A.25, A:D.161

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.86 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Discovery and optimization of isoliquiritigenin as a death-associated protein kinase 1 inhibitor. Eur.J.Med.Chem. (2024)

Release Date

2024-10-09

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1

Related Entries With Identical Sequence