SMTL ID : 9ix3.1

Crystal structure of the mouse RIP3 kinase domain in complexed with compound 18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

2 x 01: ~{N}-[4-[2-(cyclopropylcarbonylamino)pyridin-4-yl]oxy-2,3-dimethyl-phenyl]-1-(4-fluorophenyl)-2-oxidanylidene-pyridine-3-carboxamide

01.1: 22 residues within 4Å: Chain A: V.28, V.36, A.49, K.51, E.61, A.64, M.65, L.68, V.73, L.93, T.95, R.96, F.97, M.98, G.101, L.132, H.141, L.150, L.159, A.160, D.161, F.162 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:K.51, A:K.51, A:E.61, A:A.64, A:M.65, A:L.68, A:V.73, A:L.93, A:L.93, A:T.95, A:F.97, A:L.150, A:D.161, A:F.162, A:F.162 Hydrogen bonds: A:K.51, A:M.98, A:M.98, A:D.161 01.2: 22 residues within 4Å: Chain B: V.28, V.36, A.49, K.51, E.61, A.64, M.65, L.68, V.73, L.93, T.95, R.96, F.97, M.98, G.101, L.132, H.141, L.150, L.159, A.160, D.161, F.162 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.28, B:K.51, B:E.61, B:A.64, B:M.65, B:L.68, B:V.73, B:L.93, B:L.93, B:T.95, B:F.97, B:L.150, B:A.160, B:D.161, B:F.162 Hydrogen bonds: B:K.51, B:M.98, B:M.98, B:D.161 pi-Stacking: B:F.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, H. et al., Structure-based design of potent and selective inhibitors targeting RIPK3 for eliminating on-target toxicity in vitro. Nat Commun (2025)

Release Date

2025-05-07

Peptides

Receptor-interacting serine/threonine-protein kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 3

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