SMTL ID : 9lvg.1

Crystal structure of the mouse RIP3 kinase domain in complexed with Robinetin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x LKR: 3,7-bis(oxidanyl)-2-[3,4,5-tris(oxidanyl)phenyl]chromen-4-one(Non-covalent)

LKR.1: 11 residues within 4Å: Chain A: V.28, A.49, K.51, E.61, L.74, T.95, R.96, F.97, M.98, L.150, D.161 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.28, A:A.49, A:L.74, A:F.97, A:F.97, A:L.150 Hydrogen bonds: A:K.51, A:K.51, A:T.95, A:T.95, A:M.98, A:D.161 Water bridges: A:D.161, A:F.162 LKR.2: 12 residues within 4Å: Chain B: V.28, V.36, A.49, K.51, E.61, L.74, T.95, R.96, F.97, M.98, L.150, D.161 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.28, B:L.74, B:L.150 Hydrogen bonds: B:K.51, B:K.51, B:E.61, B:T.95, B:T.95, B:M.98, B:D.161 Water bridges: B:F.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, H. et al., Identification of RIPK3 as a target of flavonoids for anti-necroptosis in vitro. Bioorg.Chem. (2025)

Release Date

2025-05-07

Peptides

Receptor-interacting serine/threonine-protein kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 3

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