SMTL ID : 9iya.1

Cryo-EM structure of GPR55-Fab-Nb-ONO-9710531 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 01: 4-(3-bromanyl-5-ethoxy-4-oxidanyl-phenyl)-~{N}-(2-methoxyphenyl)-2-methyl-5-oxidanylidene-4,6,7,8-tetrahydro-1~{H}-quinoline-3-carboxamide

01.1: 16 residues within 4Å: Chain A: E.92, F.96, Y.100, V.143, G.146, S.147, P.149, I.150, H.164, N.165, M.166, T.170, W.171, F.176, L.179, E.180 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:E.92, A:E.92, A:F.96, A:Y.100, A:H.164, A:T.170, A:W.171, A:W.171, A:F.176, A:L.179, A:L.179, A:E.180 Hydrogen bonds: A:G.146 pi-Stacking: A:F.96, A:F.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, H. et al., Structure basis of ligand recognition and activation of GPR55. Cell Res. (2024)

Release Date

2025-01-01

Peptides

G-protein coupled receptor 55,Soluble cytochrome b562: A
anti-BRIL Fab Heavy chain: B
anti-BRIL Fab Light chain: C
anti-Fab Nanobody: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

D
N

Membrane

We predict this structure to be a membrane protein.
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G-protein coupled receptor 55,Soluble cytochrome b562

anti-BRIL Fab Heavy chain

anti-BRIL Fab Light chain

anti-Fab Nanobody

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