SMTL ID : 9j07.1

Acetyl xylan esterase B from Aspergillus oryzae (AoAXEB), apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 5 residues within 4Å: Chain A: N.295, G.296, T.297, Y.298 Ligands: K.5 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: P.294, N.295 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain A: G.40, N.42, Q.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.42, A:Q.50 Water bridges: A:N.42 NAG.4: 5 residues within 4Å: Chain A: P.232, R.236, N.248, Y.261, Y.263 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.261 Hydrogen bonds: A:R.236, A:Y.263 Water bridges: A:N.248

1 x K: POTASSIUM ION(Non-covalent)

K.5: 3 residues within 4Å: Chain A: N.295, G.296 Ligands: PGE.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.295, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, C. et al., Identification and structural characterization of a novel acetyl xylan esterase from Aspergillus oryzae. Febs J. (2025)

Release Date

2025-02-05

Peptides

feruloyl esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

feruloyl esterase

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