SMTL ID : 9j08.1

Acetyl xylan esterase B from Aspergillus oryzae (AoAXEB), succinate complex form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.40, N.42, Q.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.42, A:Q.50 Water bridges: A:N.42 NAG.2: 3 residues within 4Å: Chain A: N.293, P.294, N.295 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.295 Water bridges: A:N.293

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: T.190, S.230, P.232, H.233, R.236 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.190, A:P.232 Hydrogen bonds: A:S.230, A:H.233 Salt bridges: A:R.236

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.4: 7 residues within 4Å: Chain A: G.75, R.76, K.78, K.148, S.149, N.150, H.282 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.76, A:S.149, A:S.149, A:N.150 Water bridges: A:D.113, A:K.148, A:K.148, A:K.148 Salt bridges: A:K.78, A:K.148, A:H.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, C. et al., Identification and structural characterization of a novel acetyl xylan esterase from Aspergillus oryzae. Febs J. (2025)

Release Date

2025-02-05

Peptides

feruloyl esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

feruloyl esterase

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