SMTL ID : 9j4p.1

Regulatory domain and kinase domain of ALPK1 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DY0: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3S,4S,5S,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate(Covalent)

DY0.1: 16 residues within 4Å: Chain A: F.61, R.116, Y.119, Q.146, R.150, R.153, V.195, Q.198, Y.224, D.231, K.233, G.234, S.236, T.237, S.289, F.295 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:R.153, A:R.153, A:Q.198, A:Y.224, A:D.231, A:K.233, A:S.236, A:S.236, A:T.237, A:S.289 Water bridges: A:R.150, A:R.153, A:Q.198, A:D.231 Salt bridges: A:R.116, A:R.116, A:R.116, A:R.150, A:R.150, A:R.153, A:R.153, A:R.153, A:K.233, A:K.233, A:K.233 pi-Stacking: A:F.295, A:F.295

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain B: H.200, H.259, C.262, C.266, R.273 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.200, B:H.259, B:C.262, B:C.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Regulatory domain and kinase domain of ALPK1 protein. To Be Published

Release Date

2025-07-30

Peptides

Alpha-protein kinase 1: A
Alpha-protein kinase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Alpha-protein kinase 1

Alpha-protein kinase 1

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