SMTL ID : 9jma.1 (1 other biounit)

Crystal structure of glycosyltransferase AvpGT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 15 residues within 4Å: Chain A: P.8, T.9, Y.10, R.12, D.40, Q.66, G.68, P.69, A.72, R.73, D.89, D.90, D.91, R.206 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:Y.10, A:D.40, A:D.90, A:D.90 Water bridges: A:Y.10, A:Q.66, A:R.73, A:D.89, A:D.89, A:D.91, A:R.206, A:R.206, A:R.206, A:R.206 Salt bridges: A:R.12, A:R.206

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.91 Ligands: UDP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.91, A:D.91, H2O.2, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Efficient Synthesis of Glycodiversified Nucleoside Analogues by a Thermophilic Promiscuous Glycosyltransferase. Acs Catalysis (2025)

Release Date

2025-01-29

Peptides

GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase

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