SMTL ID : 9jn3.1 (1 other biounit)

Crystal structure of AvpGT in complex with Ara-A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 21 residues within 4Å: Chain A: P.8, T.9, Y.10, R.12, D.40, Q.66, G.68, P.69, A.72, R.73, D.89, D.90, D.91, P.155, V.176, E.177, E.178, D.179, R.206, Y.227 Ligands: MG.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.10, A:D.40, A:R.73, A:D.89, A:D.90, A:D.90, A:E.177, A:D.179 Water bridges: A:W.180 Salt bridges: A:R.12, A:R.206, A:R.206

1 x RAB: 2-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL(Non-covalent)

RAB.2: 9 residues within 4Å: Chain A: T.150, E.177, R.206, Y.227, W.231, Y.256, Y.273, Y.274, E.275 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.150, A:R.206, A:Y.256, A:Y.256, A:E.275 Water bridges: A:E.275

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.91, H.205 Ligands: UPG.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.91, A:D.91, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Efficient Synthesis of Glycodiversified Nucleoside Analogues by a Thermophilic Promiscuous Glycosyltransferase. Acs Catalysis (2025)

Release Date

2025-01-29

Peptides

GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase

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