SMTL ID : 9jy1.1

delta epsilon/delta epsilon Fab-TCR tetramer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-4-2-4-2-2-2-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain E: S.40, N.74 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.74 NAG.2: 4 residues within 4Å: Chain E: F.22, N.38, T.76, Y.79 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.22, E:Y.79 NAG.3: 2 residues within 4Å: Chain O: S.40, N.74 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:N.74 NAG.4: 4 residues within 4Å: Chain O: F.22, N.38, T.76, Y.79 2 PLIP interactions: 2 interactions with chain O Hydrophobic interactions: O:F.22, O:Y.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Structures of the apo and agonist-crosslinked human gamma delta T-cell receptor. To Be Published

Release Date

2025-10-22

Peptides

Fab heavy chain: AK
Fab light chain: BL
T-cell surface glycoprotein CD3 zeta chain: CDMN
T-cell surface glycoprotein CD3 delta chain: EO
T-cell surface glycoprotein CD3 epsilon chain: FGPQ
T-cell surface glycoprotein CD3 gamma chain: HR
T cell receptor delta variable 2,T cell receptor delta constant: IS
T cell receptor gamma variable 9,T cell receptor gamma constant 1: JT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

K
R

B
O

L
Q

C
a

D
b

M
A

N
B

E
d

O
D

F
e

G
f

P
E

Q
F

H
g

R
G

I
m

S
M

J
n

T
N

Membrane

We predict this structure to be a membrane protein.
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Fab heavy chain

Fab light chain

T-cell surface glycoprotein CD3 zeta chain

T-cell surface glycoprotein CD3 delta chain

T-cell surface glycoprotein CD3 epsilon chain

T-cell surface glycoprotein CD3 gamma chain

T cell receptor delta variable 2,T cell receptor delta constant

T cell receptor gamma variable 9,T cell receptor gamma constant 1

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