SMTL ID : 9jys.1

Crystal structure of the PIN1 and fragment 5 complex.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 01: 4-(aminomethyl)-N,N-dimethyl-aniline

01.1: 10 residues within 4Å: Chain A: H.59, L.61, C.113, L.122, M.130, Q.131, F.134, S.154, H.157 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.63, A:R.69 pi-Cation interactions: A:H.59

1 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.2: 10 residues within 4Å: Chain A: Y.23, N.30, A.31, S.32, W.34, I.93, K.97, M.146, S.147, G.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.32, A:K.97, A:M.146 Water bridges: A:N.90

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.142, T.143, R.161 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.143, A:T.143 Water bridges: A:R.161, A:R.161, A:R.161 Salt bridges: A:R.142, A:R.161 SO4.4: 5 residues within 4Å: Chain A: K.63, R.68, R.69, S.154 Ligands: 01.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:S.154 Water bridges: A:K.63, A:S.71 Salt bridges: A:K.63, A:R.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, Q.J. et al., Fragment-Based Compound Screening Based on PIN1 Crystals. To Be Published

Release Date

2025-10-15

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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