SMTL ID : 9jz4.1

Crystal structure of the PIN1 and fragment 9 complex.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x 01: 1,3-dihydro-2-benzofuran-5-amine

01.1: 10 residues within 4Å: Chain A: H.59, L.61, C.113, M.130, Q.131, F.134, T.152, S.154, H.157 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.131

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.2: 11 residues within 4Å: Chain A: Y.23, N.30, A.31, S.32, Q.33, W.34, I.93, K.97, M.146, S.147, G.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.32, A:K.97 Water bridges: A:W.34

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.142, T.143, R.161 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.143, A:T.143 Water bridges: A:R.161, A:R.161, A:R.161, A:R.161 Salt bridges: A:R.142, A:R.161 SO4.4: 4 residues within 4Å: Chain A: K.63, R.69, S.154 Ligands: 01.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.69 Salt bridges: A:K.63, A:R.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, Q. et al., Uncovering druggable hotspots on Pin1 via X-ray crystallographic fragment screening. Eur.J.Med.Chem. (2025)

Release Date

2025-08-27

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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