9k10.1 | SWISS-MODEL Template Library

SMTL ID : 9k10.1

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Covalent)

GNP.1:	17 residues within 4Å: Chain B: P.20, S.21, G.22, G.23, G.24, K.25, T.26, T.27, D.53, R.63, S.64, D.83, T.84, G.86, K.138, D.140, S.262 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:P.20, B:G.22, B:G.23, B:K.25, B:K.25, B:T.26, B:T.26, B:T.27, B:S.64, B:S.64, B:S.64, B:G.86, B:K.138, B:K.138, B:Q.263 Salt bridges: B:K.138, B:D.140 pi-Cation interactions: B:K.138
GNP.2:	17 residues within 4Å: Chain C: P.20, S.21, G.22, G.23, G.24, K.25, T.26, T.27, V.45, R.63, S.64, D.83, T.84, G.86, K.138, D.140, S.262 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:P.20, C:G.22, C:G.23, C:K.25, C:K.25, C:T.26, C:T.26, C:S.44, C:S.64, C:S.64, C:S.64, C:G.86, C:K.138, C:K.138 Salt bridges: C:K.138, C:D.140 pi-Cation interactions: C:K.138

407 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

4 x ZN: ZINC ION(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Baid, P. et al., Cryo-EM structural analyses reveal a unique role for elongation factor G2 (EF-G2) in Mycobacteria. Febs J. (2025)

Release Date

2025-07-09

Peptides

50S ribosomal protein bL37: A
Translation elongation factor EF-G: BC
50S ribosomal protein L2: E
50S ribosomal protein L3: F
50S ribosomal protein L4: G
50S ribosomal protein L5: H
50S ribosomal protein L6: I
50S ribosomal protein L9: J
50S ribosomal protein L10: K
50S ribosomal protein L11: L
50S ribosomal protein L13: M
50S ribosomal protein L14: N
50S ribosomal protein L15: O
50S ribosomal protein L16: P
50S ribosomal protein L17: Q
50S ribosomal protein L18: R
50S ribosomal protein L19: S
50S ribosomal protein L20: T
50S ribosomal protein L21: U
50S ribosomal protein L22: V
50S ribosomal protein L23: W
Large ribosomal subunit protein uL24: X
50S ribosomal protein L25: Y
50S ribosomal protein L27: Z
50S ribosomal protein L28: 0
50S ribosomal protein L29: 1
50S ribosomal protein L30: 2
50S ribosomal protein L32: 3
50S ribosomal protein L33 1: 4
50S ribosomal protein L34: 5
50S ribosomal protein L35: 6
50S ribosomal protein L36: 7
50S ribosomal protein L31: 8

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
3

B
5

C
6

E
C

F
D

G
E

H
F

I
G

J
H

K
I

L
J

M
K

N
L

O
M

P
N

Q
O

R
P

S
Q

T
R

U
S

V
T

W
U

X
V

Y
W

Z
X

0
Y

1
Z

2
a

3
b

4
c

5
d

6
e

7
f

8
g

50S ribosomal protein bL37

Translation elongation factor EF-G

Toggle Identical (BC)

50S ribosomal protein L2

50S ribosomal protein L3

50S ribosomal protein L4

50S ribosomal protein L5

50S ribosomal protein L6

50S ribosomal protein L9

50S ribosomal protein L10

50S ribosomal protein L11

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

50S ribosomal protein L16

50S ribosomal protein L17

50S ribosomal protein L18

50S ribosomal protein L19

50S ribosomal protein L20

50S ribosomal protein L21

50S ribosomal protein L22

50S ribosomal protein L23

Large ribosomal subunit protein uL24

50S ribosomal protein L25

50S ribosomal protein L27

50S ribosomal protein L28

50S ribosomal protein L29

50S ribosomal protein L30

50S ribosomal protein L32

50S ribosomal protein L33 1

50S ribosomal protein L34

50S ribosomal protein L35

50S ribosomal protein L36

50S ribosomal protein L31

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