SMTL ID : 9khc.1 (1 other biounit)

Crystal structure of wild-type human fibrinogen gamma chain C-terminal domain (gamma-nodule) complexed with GPRP peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x GLY- PRO- ARG- PRO: GLY-PRO-ARG-PRO(Non-covalent)

GLY-PRO-ARG-PRO.1: 13 residues within 4Å: Chain A: F.157, D.159, D.163, T.167, F.184, Q.191, D.192, K.200, C.201, H.202, Y.225, D.226, R.237 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:D.159, A:F.184, A:F.184, A:K.200 Hydrogen bonds: A:Q.191, A:K.200, A:C.201, A:H.202, A:D.226 Water bridges: A:D.159, A:D.159, A:D.159, A:D.226, A:D.226 Salt bridges: A:D.192, A:K.200 pi-Cation interactions: A:Y.225

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.180, D.182, F.184, G.186 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.180, A:D.180, A:D.182, A:G.186, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaido, T. et al., Crystal structure of wild-type human fibrinogen gamma chain C-terminal domain (gamma-nodule) complexed with GPRP peptide. To Be Published

Release Date

2025-11-12

Peptides

Isoform Gamma-A of Fibrinogen gamma chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform Gamma-A of Fibrinogen gamma chain

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