SMTL ID : 9khc.2 (1 other biounit)

Crystal structure of wild-type human fibrinogen gamma chain C-terminal domain (gamma-nodule) complexed with GPRP peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x GLY- PRO- ARG- PRO: GLY-PRO-ARG-PRO(Non-covalent)

GLY-PRO-ARG-PRO.1: 12 residues within 4Å: Chain A: F.157, D.159, D.163, T.167, F.184, Q.191, D.192, K.200, C.201, H.202, Y.225, D.226 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.167, A:F.184, A:F.184, A:K.200 Hydrogen bonds: A:Q.191, A:K.200, A:K.200, A:C.201, A:H.202, A:D.226 Water bridges: A:D.226, A:D.226 Salt bridges: A:D.192, A:K.200 pi-Cation interactions: A:Y.225

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.180, D.182, F.184, G.186 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.180, A:D.180, A:G.186, H2O.3, H2O.6

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: A.36, N.37, Q.38, F.40, K.94, L.97 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.37, A:Q.38 Water bridges: A:N.37, A:K.94, A:K.94, A:K.94, A:K.94 GOL.4: 4 residues within 4Å: Chain A: W.177, D.178, N.179, N.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.178, A:N.187 Water bridges: A:D.178, A:D.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaido, T. et al., Crystal structure of wild-type human fibrinogen gamma chain C-terminal domain (gamma-nodule) complexed with GPRP peptide. To Be Published

Release Date

2025-11-12

Peptides

Isoform Gamma-A of Fibrinogen gamma chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Isoform Gamma-A of Fibrinogen gamma chain

Related Entries With Identical Sequence