SMTL ID : 9kni.1

Structural complex of FTO bound with 12j

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 13 residues within 4Å: Chain A: R.69, N.178, H.204, D.206, V.217, Y.268, H.280, V.282, R.289, S.291, T.293, R.295 Ligands: 01.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.282, A:T.293 Hydrogen bonds: A:N.178, A:Y.268, A:Y.268, A:S.291 Salt bridges: A:R.69, A:R.289, A:R.295

1 x 01: 3-[[2,6-bis(chloranyl)-4-(3,5-dimethyl-1H-pyrazol-4-yl)phenyl]amino]thiophene-2-carboxylic acid

01.2: 16 residues within 4Å: Chain A: I.58, L.63, T.65, R.69, Y.79, Y.81, L.82, L.176, V.201, S.202, H.204, H.205, D.206, E.207, R.295 Ligands: AKG.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.81, A:Y.81, A:L.82, A:L.176, A:E.207 Hydrogen bonds: A:Y.79, A:S.202, A:D.206, A:E.207, A:R.295, A:R.295 pi-Stacking: A:H.204 Halogen bonds: A:S.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, D. et al., Development of 3-arylaminothiophenic-2-carboxylic acid derivatives as new FTO inhibitors showing potent antileukemia activities. Eur.J.Med.Chem. (2025)

Release Date

2025-03-12

Peptides

Alpha-ketoglutarate-dependent dioxygenase FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase FTO

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