SMTL ID : 9kra.1

The RBD of HKU5 complex with Pipistrellus abramus ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.31, T.33, K.34, M.198 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: N.53, T.55, E.57, N.58, R.339 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.57 NAG-NAG.3: 1 residues within 4Å: Chain B: N.103 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: N.215, Y.216, S.217, Y.220 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain A: K.132 Chain B: N.386 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain B: H.416, G.419, N.545 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 2 residues within 4Å: Chain A: Q.107, N.108 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: E.152, N.279 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.279 NAG.9: 2 residues within 4Å: Chain B: N.431, E.432 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.432, B:E.432

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y.Y. et al., Molecular Insights into Species-Specific ACE2 Recognition of Coronavirus HKU5. To Be Published

Release Date

2025-11-05

Peptides

Spike protein S1: A
Angiotensin-converting enzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike protein S1

Angiotensin-converting enzyme

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