SMTL ID : 9mv0.1

Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.20 Å

Oligo State

hetero-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.386 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: N.688, I.692 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain C: N.386, Q.387 Chain D: Y.523 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain C: H.158, N.688, S.690, I.692 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: S.544, N.545 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.545 NAG.6: 2 residues within 4Å: Chain A: N.276, N.279 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain A: Q.81, N.103, V.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.81 NAG.8: 1 residues within 4Å: Chain A: N.215 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.215 NAG.9: 2 residues within 4Å: Chain C: S.544, N.545 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.545 NAG.10: 2 residues within 4Å: Chain C: N.276, N.279 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain C: Q.81, N.103 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.81 NAG.12: 1 residues within 4Å: Chain C: N.215 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madel Alfajaro, M. et al., HKU5 bat merbecoviruses engage bat and mink ACE2 as entry receptors. Nat Commun (2025)

Release Date

2025-07-30

Peptides

Angiotensin-converting enzyme: AC
Spike glycoprotein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Angiotensin-converting enzyme

Spike glycoprotein

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