SMTL ID : 9kw5.1

Crystal structure of CYP105A1 R84A, diclofenac and lanoconazole complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: F.95, I.96, H.103, R.107, F.114, L.240, L.241, A.244, T.248, M.252, L.285, I.290, A.291, A.294, R.297, N.320, A.347, F.348, G.349, V.352, H.353, C.355, L.356, G.357, A.361 Ligands: 01.3 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:F.95, A:F.95, A:I.96, A:F.114, A:L.240, A:L.285, A:I.290, A:A.291, A:F.348, A:L.356, A:A.361 Water bridges: A:G.296, A:G.296 Salt bridges: A:H.103, A:R.107, A:R.297, A:H.353 pi-Stacking: A:F.348 Metal complexes: A:C.355

1 x DIF: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID(Non-covalent)

DIF.2: 8 residues within 4Å: Chain A: R.73, V.88, L.180, L.240, I.243, A.244, I.396 Ligands: 01.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.180, A:L.240, A:I.243, A:A.244, A:I.396 Water bridges: A:R.73, A:L.240 Salt bridges: A:R.73 Halogen bonds: A:R.73

1 x 01: (2~{E})-2-[(4~{R})-4-(2-chlorophenyl)-1,3-dithiolan-2-ylidene]-2-imidazol-1-yl-ethanenitrile

01.3: 13 residues within 4Å: Chain A: R.73, T.81, F.85, I.96, A.244, T.248, A.291, I.293, A.294, T.394, I.396 Ligands: HEM.1, DIF.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.85, A:I.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirano, Y. et al., Cooperative inhibition in cytochrome P450 between a substrate and an apparent noncompetitive inhibitor. J.Biol.Chem. (2025)

Release Date

2025-05-21

Peptides

Vitamin D3 dihydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 dihydroxylase

Related Entries With Identical Sequence