SMTL ID : 9kyg.1 (1 other biounit)

Crystal structure of E.coli ac4C amidohydrolase YqfB in complex with cytidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x CTN: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE(Non-covalent)

CTN.1: 11 residues within 4Å: Chain A: T.7, F.8, F.9, F.12, T.24, I.25, R.26, F.44, E.74, I.88, Y.89 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.88 Hydrogen bonds: A:F.9, A:K.21, A:I.25, A:I.25, A:R.26, A:R.26, A:Y.89 Water bridges: A:T.7 pi-Cation interactions: A:R.26

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: D.87 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.87, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, W.T. et al., Crystal structure of E.coli ac4C amidohydrolase YqfB in complex with cytidine. To Be Published

Release Date

2025-08-20

Peptides

N(4)-acetylcytidine amidohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N(4)-acetylcytidine amidohydrolase

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