SMTL ID : 9l49.1

Crystal structure of HLA-C*12:03-RV9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ALA- PHE- PRO- GLY- LEU- ARG- TYR- VAL: Toll-like receptor 9(Non-covalent)

ARG-ALA-PHE-PRO-GLY-LEU-ARG-TYR-VAL.1: 32 residues within 4Å: Chain A: M.4, Y.6, Y.8, Y.58, R.61, E.62, K.65, R.68, Q.69, A.72, D.73, S.76, N.79, L.80, Y.83, L.94, Q.95, W.96, Y.98, S.115, Y.122, T.142, K.145, W.146, A.149, E.151, Q.154, W.155, Y.158, T.162, W.166, Y.170 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:A.72, A:L.80, A:W.96, A:W.96, A:Y.98, A:Y.122, A:K.145, A:W.146, A:W.155, A:Y.158, A:Y.158, A:T.162, A:W.166, A:W.166 Hydrogen bonds: A:Y.58, A:E.62, A:K.65, A:R.68, A:Q.69, A:Q.69, A:S.76, A:S.76, A:N.79, A:Y.83, A:Y.98, A:Y.98, A:S.115, A:E.151, A:E.151, A:Y.170 Salt bridges: A:E.62, A:D.73, A:K.145 pi-Stacking: A:W.146, A:W.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., Biochemical and structural insights into position 97 micropolymorphisms in human leukocyte antigen (HLA)-C*12 allotypes and their differential disease associations. Int.J.Biol.Macromol. (2025)

Release Date

2025-03-19

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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