SMTL ID : 9l4p.1

Arabidopsis thaliana protease-associated domain of vacuolar sorting receptor 1 in complexed with vicilin-like seed storage protein 22 C-terminal pentapeptide SDRFV (pH 7.0)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ACE- SER- ASP- ARG- PHE- VAL: Vicilin-like seed storage protein 22(Non-covalent)

ACE-SER-ASP-ARG-PHE-VAL.1: 14 residues within 4Å: Chain A: G.1, S.2, R.3, V.6, R.78, C.81, Y.82, F.83, I.109, T.110, M.111, D.112, T.113, P.114 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:S.2, A:I.109, A:P.114 Hydrogen bonds: A:R.3, A:R.3, A:R.3, A:F.83, A:T.110, A:T.110, A:T.110, A:T.110, A:D.112 Water bridges: A:R.78 Salt bridges: A:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lui, S.N. et al., Structural insights into how vacuolar sorting receptor recognizes the C-terminal sorting determinant of a vicilin-like seed storage protein. Febs J. (2025)

Release Date

2025-09-10

Peptides

Vacuolar-sorting receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vacuolar-sorting receptor 1

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