SMTL ID : 9lj3.4 (5 other biounits)

Crystal structure of P25

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

monomer

Ligands

1 x 01: 3-[[4-chloranyl-2-[(2-hydroxyethylamino)methyl]-5-[[2-methyl-3-[3-[2-[2-[(3~{R})-3-oxidanylpyrrolidin-1-yl]ethoxy]ethoxy]phenyl]phenyl]methoxy]phenoxy]methyl]benzenecarbonitrile

01.1: 13 residues within 4Å: Chain A: F.2, T.3, I.37, Y.39, E.41, D.44, Q.49, V.51, M.98, I.99, S.100, A.104, D.105 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.39, A:D.44, A:M.98, A:A.104, A:A.104 Salt bridges: A:D.105 pi-Stacking: A:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Z. et al., Discovery and Crystallography Study of Novel Resorcinol Dibenzyl Ether-Based PD-1/PD-L1 Inhibitors with Improved Drug-like and Pharmacokinetic Properties for Cancer Treatment. J.Med.Chem. (2025)

Release Date

2025-06-25

Peptides

Programmed cell death 1 ligand 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Programmed cell death 1 ligand 1

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