SMTL ID : 9lyf.1

Structure-based Discovery of Novel non-Covalent Small Molecule Inhibitors of USP30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

monomer

Ligands

1 x 01: 5-(3-cyanophenyl)-~{N}-[[(3~{S})-1-(iminomethyl)pyrrolidin-3-yl]methyl]-1,3,4-oxadiazole-2-carboxamide

01.1: 15 residues within 4Å: Chain A: N.11, G.13, N.14, C.16, D.100, R.232, K.243, H.278, D.281, M.282, H.283, G.285, H.286, F.287, Y.329 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.287, A:Y.329 Hydrogen bonds: A:N.11, A:G.13, A:D.100, A:G.285, A:H.286 pi-Stacking: A:H.278

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.139, C.142, C.189, C.192 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.189, A:C.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anbazhagan, P. et al., Structure-based discovery of novel non-covalent small molecule inhibitors of USP30. J.Comput.Aided Mol.Des. (2025)

Release Date

2025-05-21

Peptides

Ubiquitin carboxyl-terminal hydrolase 30: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin carboxyl-terminal hydrolase 30

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