SMTL ID : 9mgq.1

Crystal structure of PRMT5:MEP50 in complex with sinefungin and compound 47

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-4-4-mer

Ligands

4 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 22 residues within 4Å: Chain A: L.323, L.327, Y.332, K.341, Y.342, G.373, A.374, G.375, P.378, L.379, V.399, E.400, K.401, N.402, S.426, D.427, M.428, R.429, E.443, L.444, C.457 Ligands: 01.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.332, A:Y.332, A:Y.342, A:G.373, A:G.375, A:K.401, A:D.427, A:M.428, A:E.443 Water bridges: A:N.402 Salt bridges: A:K.341 pi-Cation interactions: A:K.401 SFG.33: 22 residues within 4Å: Chain C: L.323, L.327, Y.332, K.341, Y.342, G.373, A.374, G.375, P.378, L.379, V.399, E.400, K.401, N.402, S.426, D.427, M.428, R.429, E.443, L.444, C.457 Ligands: 01.34 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:Y.332, C:Y.332, C:Y.342, C:G.373, C:G.375, C:K.401, C:D.427, C:M.428, C:E.443 Water bridges: C:N.402 Salt bridges: C:K.341 pi-Cation interactions: C:K.401 SFG.65: 22 residues within 4Å: Chain E: L.323, L.327, Y.332, K.341, Y.342, G.373, A.374, G.375, P.378, L.379, V.399, E.400, K.401, N.402, S.426, D.427, M.428, R.429, E.443, L.444, C.457 Ligands: 01.66 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:Y.332, E:Y.342, E:Y.342, E:G.373, E:G.375, E:K.401, E:D.427, E:M.428, E:E.443 Water bridges: E:N.402 Salt bridges: E:K.341 pi-Cation interactions: E:K.401 SFG.97: 22 residues within 4Å: Chain G: L.323, L.327, Y.332, K.341, Y.342, G.373, A.374, G.375, P.378, L.379, V.399, E.400, K.401, N.402, S.426, D.427, M.428, R.429, E.443, L.444, C.457 Ligands: 01.98 12 PLIP interactions: 12 interactions with chain G Hydrogen bonds: G:Y.332, G:Y.342, G:Y.342, G:G.373, G:G.375, G:K.401, G:D.427, G:M.428, G:E.443 Water bridges: G:N.402 Salt bridges: G:K.341 pi-Cation interactions: G:K.401

4 x 01: 2-(cyclobutylamino)-N-{(2R)-2-hydroxy-2-[(3S)-1,2,3,4-tetrahydroisoquinolin-3-yl]ethyl}pyridine-4-carboxamide

01.2: 23 residues within 4Å: Chain A: F.308, A.309, Y.312, Q.317, L.320, L.327, T.331, Y.332, V.334, F.335, K.341, E.443, L.445, G.446, S.447, E.452, V.511, F.585, S.586, W.587, F.588 Ligands: SFG.1, SO4.25 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.308, A:Y.312, A:L.327, A:F.335, A:V.511, A:F.585, A:F.588, A:F.588 Hydrogen bonds: A:F.585, A:W.587, A:F.588 pi-Stacking: A:F.335, A:F.335 01.34: 23 residues within 4Å: Chain C: F.308, A.309, Y.312, Q.317, L.320, L.327, T.331, Y.332, V.334, F.335, K.341, E.443, L.445, G.446, S.447, E.452, V.511, F.585, S.586, W.587, F.588 Ligands: SFG.33, SO4.57 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:F.308, C:Y.312, C:L.327, C:F.335, C:V.511, C:F.585, C:F.588, C:F.588 Hydrogen bonds: C:F.585, C:W.587, C:F.588 pi-Stacking: C:F.335, C:F.335 01.66: 23 residues within 4Å: Chain E: F.308, A.309, Y.312, Q.317, L.320, L.327, T.331, Y.332, V.334, F.335, K.341, E.443, L.445, G.446, S.447, E.452, V.511, F.585, S.586, W.587, F.588 Ligands: SFG.65, SO4.89 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:F.308, E:Y.312, E:L.327, E:F.335, E:V.511, E:F.585, E:F.588, E:F.588 Hydrogen bonds: E:F.585, E:W.587, E:F.588 pi-Stacking: E:F.335, E:F.335 01.98: 23 residues within 4Å: Chain G: F.308, A.309, Y.312, Q.317, L.320, L.327, T.331, Y.332, V.334, F.335, K.341, E.443, L.445, G.446, S.447, E.452, V.511, F.585, S.586, W.587, F.588 Ligands: SFG.97, SO4.121 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:F.308, G:Y.312, G:L.327, G:F.335, G:V.511, G:F.585, G:F.588, G:F.588 Hydrogen bonds: G:F.585, G:W.587, G:F.588 pi-Stacking: G:F.335, G:F.335

76 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: P.403, V.406, V.407, E.410, S.425 Chain G: Q.74 Ligands: PEG.125 Ligand excluded by PLIP EDO.4: 10 residues within 4Å: Chain A: P.164, L.165, V.166, L.171, E.215, I.216, G.217, D.219, L.220, P.221 Ligand excluded by PLIP EDO.5: 10 residues within 4Å: Chain A: W.194, M.195, H.198, R.228, N.553, T.554, V.555, T.599, V.600 Ligands: EDO.51 Ligand excluded by PLIP EDO.6: 10 residues within 4Å: Chain A: E.328, S.329, Q.330 Chain G: G.83, W.86, N.87, Y.124, L.125, G.126 Ligands: EDO.18 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: I.150, Y.206, S.207, K.208, R.493 Ligand excluded by PLIP EDO.8: 11 residues within 4Å: Chain A: W.194, R.201, L.230, G.231, E.232, S.484, S.485, S.486, V.555, H.557 Ligands: EDO.11 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: S.95, P.96, R.99, P.133, N.135 Chain B: Q.177 Ligands: PEG.28 Ligand excluded by PLIP EDO.10: 8 residues within 4Å: Chain A: W.197, R.201, C.204, D.205, Y.206, S.207, I.210, N.490 Ligand excluded by PLIP EDO.11: 12 residues within 4Å: Chain A: W.194, D.227, R.228, L.230, E.232, S.484, H.518, L.520, N.553, T.554, V.555 Ligands: EDO.8 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain A: L.116, Q.117, N.120, F.121 Chain G: P.403, N.404 Ligands: PEG.29 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain A: K.93, L.94, L.131, L.132, P.133, R.162 Ligands: PEG.28 Ligand excluded by PLIP EDO.14: 9 residues within 4Å: Chain A: I.226, D.227, W.229, L.230, I.234, L.261, R.264, L.265, L.268 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: N.533, D.535, M.537, I.538, D.539, R.542 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: I.538, D.539, N.540, N.541, S.614 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain A: G.83, R.84, N.87 Chain G: Q.330 Ligand excluded by PLIP EDO.18: 11 residues within 4Å: Chain A: S.329, Q.330, E.333, R.376 Chain G: D.78, L.79, L.81, S.82, G.83, W.86 Ligands: EDO.6 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain A: T.626, P.628, V.629, C.630 Chain C: M.195, H.198, N.199 Ligands: EDO.37 Ligand excluded by PLIP EDO.30: 5 residues within 4Å: Chain B: A.182, A.183, A.227, W.228, F.271 Ligand excluded by PLIP EDO.31: 9 residues within 4Å: Chain A: V.104, K.106, I.107 Chain B: E.241, N.242, G.243, S.263, Q.264, C.265 Ligand excluded by PLIP EDO.35: 7 residues within 4Å: Chain C: P.403, V.406, V.407, E.410, S.425 Chain E: Q.74 Ligands: PEG.93 Ligand excluded by PLIP EDO.36: 10 residues within 4Å: Chain C: P.164, L.165, V.166, L.171, E.215, I.216, G.217, D.219, L.220, P.221 Ligand excluded by PLIP EDO.37: 10 residues within 4Å: Chain C: W.194, M.195, H.198, R.228, N.553, T.554, V.555, T.599, V.600 Ligands: EDO.19 Ligand excluded by PLIP EDO.38: 10 residues within 4Å: Chain C: E.328, S.329, Q.330 Chain E: G.83, W.86, N.87, Y.124, L.125, G.126 Ligands: EDO.50 Ligand excluded by PLIP EDO.39: 5 residues within 4Å: Chain C: I.150, Y.206, S.207, K.208, R.493 Ligand excluded by PLIP EDO.40: 11 residues within 4Å: Chain C: W.194, R.201, L.230, G.231, E.232, S.484, S.485, S.486, V.555, H.557 Ligands: EDO.43 Ligand excluded by PLIP EDO.41: 7 residues within 4Å: Chain C: S.95, P.96, R.99, P.133, N.135 Chain D: Q.177 Ligands: PEG.60 Ligand excluded by PLIP EDO.42: 8 residues within 4Å: Chain C: W.197, R.201, C.204, D.205, Y.206, S.207, I.210, N.490 Ligand excluded by PLIP EDO.43: 12 residues within 4Å: Chain C: W.194, D.227, R.228, L.230, E.232, S.484, H.518, L.520, N.553, T.554, V.555 Ligands: EDO.40 Ligand excluded by PLIP EDO.44: 7 residues within 4Å: Chain C: L.116, Q.117, N.120, F.121 Chain E: P.403, N.404 Ligands: PEG.61 Ligand excluded by PLIP EDO.45: 7 residues within 4Å: Chain C: K.93, L.94, L.131, L.132, P.133, R.162 Ligands: PEG.60 Ligand excluded by PLIP EDO.46: 9 residues within 4Å: Chain C: I.226, D.227, W.229, L.230, I.234, L.261, R.264, L.265, L.268 Ligand excluded by PLIP EDO.47: 6 residues within 4Å: Chain C: N.533, D.535, M.537, I.538, D.539, R.542 Ligand excluded by PLIP EDO.48: 5 residues within 4Å: Chain C: I.538, D.539, N.540, N.541, S.614 Ligand excluded by PLIP EDO.49: 4 residues within 4Å: Chain C: G.83, R.84, N.87 Chain E: Q.330 Ligand excluded by PLIP EDO.50: 11 residues within 4Å: Chain C: S.329, Q.330, E.333, R.376 Chain E: D.78, L.79, L.81, S.82, G.83, W.86 Ligands: EDO.38 Ligand excluded by PLIP EDO.51: 8 residues within 4Å: Chain A: M.195, H.198, N.199 Chain C: T.626, P.628, V.629, C.630 Ligands: EDO.5 Ligand excluded by PLIP EDO.62: 5 residues within 4Å: Chain D: A.182, A.183, A.227, W.228, F.271 Ligand excluded by PLIP EDO.63: 9 residues within 4Å: Chain C: V.104, K.106, I.107 Chain D: E.241, N.242, G.243, S.263, Q.264, C.265 Ligand excluded by PLIP EDO.67: 7 residues within 4Å: Chain C: Q.74 Chain E: P.403, V.406, V.407, E.410, S.425 Ligands: PEG.61 Ligand excluded by PLIP EDO.68: 10 residues within 4Å: Chain E: P.164, L.165, V.166, L.171, E.215, I.216, G.217, D.219, L.220, P.221 Ligand excluded by PLIP EDO.69: 10 residues within 4Å: Chain E: W.194, M.195, H.198, R.228, N.553, T.554, V.555, T.599, V.600 Ligands: EDO.115 Ligand excluded by PLIP EDO.70: 10 residues within 4Å: Chain C: G.83, W.86, N.87, Y.124, L.125, G.126 Chain E: E.328, S.329, Q.330 Ligands: EDO.82 Ligand excluded by PLIP EDO.71: 5 residues within 4Å: Chain E: I.150, Y.206, S.207, K.208, R.493 Ligand excluded by PLIP EDO.72: 11 residues within 4Å: Chain E: W.194, R.201, L.230, G.231, E.232, S.484, S.485, S.486, V.555, H.557 Ligands: EDO.75 Ligand excluded by PLIP EDO.73: 7 residues within 4Å: Chain E: S.95, P.96, R.99, P.133, N.135 Chain F: Q.177 Ligands: PEG.92 Ligand excluded by PLIP EDO.74: 8 residues within 4Å: Chain E: W.197, R.201, C.204, D.205, Y.206, S.207, I.210, N.490 Ligand excluded by PLIP EDO.75: 12 residues within 4Å: Chain E: W.194, D.227, R.228, L.230, E.232, S.484, H.518, L.520, N.553, T.554, V.555 Ligands: EDO.72 Ligand excluded by PLIP EDO.76: 7 residues within 4Å: Chain C: P.403, N.404 Chain E: L.116, Q.117, N.120, F.121 Ligands: PEG.93 Ligand excluded by PLIP EDO.77: 7 residues within 4Å: Chain E: K.93, L.94, L.131, L.132, P.133, R.162 Ligands: PEG.92 Ligand excluded by PLIP EDO.78: 9 residues within 4Å: Chain E: I.226, D.227, W.229, L.230, I.234, L.261, R.264, L.265, L.268 Ligand excluded by PLIP EDO.79: 6 residues within 4Å: Chain E: N.533, D.535, M.537, I.538, D.539, R.542 Ligand excluded by PLIP EDO.80: 5 residues within 4Å: Chain E: I.538, D.539, N.540, N.541, S.614 Ligand excluded by PLIP EDO.81: 4 residues within 4Å: Chain C: Q.330 Chain E: G.83, R.84, N.87 Ligand excluded by PLIP EDO.82: 11 residues within 4Å: Chain C: D.78, L.79, L.81, S.82, G.83, W.86 Chain E: S.329, Q.330, E.333, R.376 Ligands: EDO.70 Ligand excluded by PLIP EDO.83: 8 residues within 4Å: Chain E: T.626, P.628, V.629, C.630 Chain G: M.195, H.198, N.199 Ligands: EDO.101 Ligand excluded by PLIP EDO.94: 5 residues within 4Å: Chain F: A.182, A.183, A.227, W.228, F.271 Ligand excluded by PLIP EDO.95: 9 residues within 4Å: Chain E: V.104, K.106, I.107 Chain F: E.241, N.242, G.243, S.263, Q.264, C.265 Ligand excluded by PLIP EDO.99: 7 residues within 4Å: Chain A: Q.74 Chain G: P.403, V.406, V.407, E.410, S.425 Ligands: PEG.29 Ligand excluded by PLIP EDO.100: 10 residues within 4Å: Chain G: P.164, L.165, V.166, L.171, E.215, I.216, G.217, D.219, L.220, P.221 Ligand excluded by PLIP EDO.101: 10 residues within 4Å: Chain G: W.194, M.195, H.198, R.228, N.553, T.554, V.555, T.599, V.600 Ligands: EDO.83 Ligand excluded by PLIP EDO.102: 10 residues within 4Å: Chain A: G.83, W.86, N.87, Y.124, L.125, G.126 Chain G: E.328, S.329, Q.330 Ligands: EDO.114 Ligand excluded by PLIP EDO.103: 5 residues within 4Å: Chain G: I.150, Y.206, S.207, K.208, R.493 Ligand excluded by PLIP EDO.104: 11 residues within 4Å: Chain G: W.194, R.201, L.230, G.231, E.232, S.484, S.485, S.486, V.555, H.557 Ligands: EDO.107 Ligand excluded by PLIP EDO.105: 7 residues within 4Å: Chain G: S.95, P.96, R.99, P.133, N.135 Chain H: Q.177 Ligands: PEG.124 Ligand excluded by PLIP EDO.106: 8 residues within 4Å: Chain G: W.197, R.201, C.204, D.205, Y.206, S.207, I.210, N.490 Ligand excluded by PLIP EDO.107: 12 residues within 4Å: Chain G: W.194, D.227, R.228, L.230, E.232, S.484, H.518, L.520, N.553, T.554, V.555 Ligands: EDO.104 Ligand excluded by PLIP EDO.108: 7 residues within 4Å: Chain A: P.403, N.404 Chain G: L.116, Q.117, N.120, F.121 Ligands: PEG.125 Ligand excluded by PLIP EDO.109: 7 residues within 4Å: Chain G: K.93, L.94, L.131, L.132, P.133, R.162 Ligands: PEG.124 Ligand excluded by PLIP EDO.110: 9 residues within 4Å: Chain G: I.226, D.227, W.229, L.230, I.234, L.261, R.264, L.265, L.268 Ligand excluded by PLIP EDO.111: 6 residues within 4Å: Chain G: N.533, D.535, M.537, I.538, D.539, R.542 Ligand excluded by PLIP EDO.112: 5 residues within 4Å: Chain G: I.538, D.539, N.540, N.541, S.614 Ligand excluded by PLIP EDO.113: 4 residues within 4Å: Chain A: Q.330 Chain G: G.83, R.84, N.87 Ligand excluded by PLIP EDO.114: 11 residues within 4Å: Chain A: D.78, L.79, L.81, S.82, G.83, W.86 Chain G: S.329, Q.330, E.333, R.376 Ligands: EDO.102 Ligand excluded by PLIP EDO.115: 8 residues within 4Å: Chain E: M.195, H.198, N.199 Chain G: T.626, P.628, V.629, C.630 Ligands: EDO.69 Ligand excluded by PLIP EDO.126: 5 residues within 4Å: Chain H: A.182, A.183, A.227, W.228, F.271 Ligand excluded by PLIP EDO.127: 9 residues within 4Å: Chain G: V.104, K.106, I.107 Chain H: E.241, N.242, G.243, S.263, Q.264, C.265 Ligand excluded by PLIP

32 x SO4: SULFATE ION(Non-functional Binders)

SO4.20: 6 residues within 4Å: Chain A: E.336, R.376, G.377, P.378, N.381, W.412 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain A: F.48, T.88, V.91, P.128, W.160, Q.271 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain A: L.316, Q.317, S.318, Y.510 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain A: F.517, H.518, Q.519 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain A: G.638, R.639, S.640, Y.641, T.642 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain A: Y.312, T.331, V.334, F.335 Ligands: 01.2 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain A: S.426, E.430, W.431, V.432 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain B: H.274, S.275, H.318 Ligand excluded by PLIP SO4.52: 6 residues within 4Å: Chain C: E.336, R.376, G.377, P.378, N.381, W.412 Ligand excluded by PLIP SO4.53: 6 residues within 4Å: Chain C: F.48, T.88, V.91, P.128, W.160, Q.271 Ligand excluded by PLIP SO4.54: 4 residues within 4Å: Chain C: L.316, Q.317, S.318, Y.510 Ligand excluded by PLIP SO4.55: 3 residues within 4Å: Chain C: F.517, H.518, Q.519 Ligand excluded by PLIP SO4.56: 5 residues within 4Å: Chain C: G.638, R.639, S.640, Y.641, T.642 Ligand excluded by PLIP SO4.57: 5 residues within 4Å: Chain C: Y.312, T.331, V.334, F.335 Ligands: 01.34 Ligand excluded by PLIP SO4.58: 4 residues within 4Å: Chain C: S.426, E.430, W.431, V.432 Ligand excluded by PLIP SO4.64: 3 residues within 4Å: Chain D: H.274, S.275, H.318 Ligand excluded by PLIP SO4.84: 6 residues within 4Å: Chain E: E.336, R.376, G.377, P.378, N.381, W.412 Ligand excluded by PLIP SO4.85: 6 residues within 4Å: Chain E: F.48, T.88, V.91, P.128, W.160, Q.271 Ligand excluded by PLIP SO4.86: 4 residues within 4Å: Chain E: L.316, Q.317, S.318, Y.510 Ligand excluded by PLIP SO4.87: 3 residues within 4Å: Chain E: F.517, H.518, Q.519 Ligand excluded by PLIP SO4.88: 5 residues within 4Å: Chain E: G.638, R.639, S.640, Y.641, T.642 Ligand excluded by PLIP SO4.89: 5 residues within 4Å: Chain E: Y.312, T.331, V.334, F.335 Ligands: 01.66 Ligand excluded by PLIP SO4.90: 4 residues within 4Å: Chain E: S.426, E.430, W.431, V.432 Ligand excluded by PLIP SO4.96: 3 residues within 4Å: Chain F: H.274, S.275, H.318 Ligand excluded by PLIP SO4.116: 6 residues within 4Å: Chain G: E.336, R.376, G.377, P.378, N.381, W.412 Ligand excluded by PLIP SO4.117: 6 residues within 4Å: Chain G: F.48, T.88, V.91, P.128, W.160, Q.271 Ligand excluded by PLIP SO4.118: 4 residues within 4Å: Chain G: L.316, Q.317, S.318, Y.510 Ligand excluded by PLIP SO4.119: 3 residues within 4Å: Chain G: F.517, H.518, Q.519 Ligand excluded by PLIP SO4.120: 5 residues within 4Å: Chain G: G.638, R.639, S.640, Y.641, T.642 Ligand excluded by PLIP SO4.121: 5 residues within 4Å: Chain G: Y.312, T.331, V.334, F.335 Ligands: 01.98 Ligand excluded by PLIP SO4.122: 4 residues within 4Å: Chain G: S.426, E.430, W.431, V.432 Ligand excluded by PLIP SO4.128: 3 residues within 4Å: Chain H: H.274, S.275, H.318 Ligand excluded by PLIP

12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.27: 11 residues within 4Å: Chain A: E.137, D.138, N.139, T.140, W.196, N.199, F.200, L.203 Chain C: R.609, T.626, C.630 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.138, A:N.139, A:W.196, A:N.199, A:F.200 PEG.28: 10 residues within 4Å: Chain A: D.27, N.29, K.93, L.94, P.96, R.162, T.275 Chain B: D.134 Ligands: EDO.9, EDO.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.93, A:T.275, A:T.275 Water bridges: A:N.29, A:G.276 PEG.29: 8 residues within 4Å: Chain A: F.54, Q.74, Q.117 Chain G: P.403, N.404, V.407 Ligands: EDO.12, EDO.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.117 PEG.59: 11 residues within 4Å: Chain A: R.609, T.626, C.630 Chain C: E.137, D.138, N.139, T.140, W.196, N.199, F.200, L.203 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.138, C:N.139, C:W.196, C:N.199, C:F.200 PEG.60: 10 residues within 4Å: Chain C: D.27, N.29, K.93, L.94, P.96, R.162, T.275 Chain D: D.134 Ligands: EDO.41, EDO.45 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.93, C:T.275, C:T.275 Water bridges: C:N.29, C:G.276 PEG.61: 8 residues within 4Å: Chain C: F.54, Q.74, Q.117 Chain E: P.403, N.404, V.407 Ligands: EDO.44, EDO.67 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.117 PEG.91: 11 residues within 4Å: Chain E: E.137, D.138, N.139, T.140, W.196, N.199, F.200, L.203 Chain G: R.609, T.626, C.630 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:N.139, E:W.196, E:N.199, E:F.200 PEG.92: 10 residues within 4Å: Chain E: D.27, N.29, K.93, L.94, P.96, R.162, T.275 Chain F: D.134 Ligands: EDO.73, EDO.77 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:K.93, E:T.275 Water bridges: E:N.29, E:T.275 PEG.93: 8 residues within 4Å: Chain C: P.403, N.404, V.407 Chain E: F.54, Q.74, Q.117 Ligands: EDO.35, EDO.76 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Q.117 PEG.123: 11 residues within 4Å: Chain E: R.609, T.626, C.630 Chain G: E.137, D.138, N.139, T.140, W.196, N.199, F.200, L.203 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:N.139, G:W.196, G:N.199, G:F.200 PEG.124: 10 residues within 4Å: Chain G: D.27, N.29, K.93, L.94, P.96, R.162, T.275 Chain H: D.134 Ligands: EDO.105, EDO.109 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:K.93, G:T.275 Water bridges: G:N.29, G:T.275 PEG.125: 8 residues within 4Å: Chain A: P.403, N.404, V.407 Chain G: F.54, Q.74, Q.117 Ligands: EDO.3, EDO.108 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:Q.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cottrell, K.M. et al., MTA-Cooperative PRMT5 Inhibitors: Mechanism Switching Through Structure-Based Design. J.Med.Chem. (2025)

Release Date

2025-03-05

Peptides

Protein arginine N-methyltransferase 5: ACEG
Methylosome protein 50: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

B
B

D
B

F
B

H
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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