SMTL ID : 9mie.1

Human NLRP3 complex with compound 2 in the closed hexamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: I.151, E.152, R.167, Y.168, T.169, G.229, G.231, K.232, T.233, I.234, R.262, D.302, E.306, Y.381, P.412, W.416, H.522 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.152, A:T.169, A:T.169, A:G.229, A:T.233, A:I.234, A:D.302, A:Y.381, A:W.416 Salt bridges: A:K.232, A:R.262, A:H.522, A:H.522, A:H.522

1 x 01: (2P)-2-(4-{[(3R)-1-methylpiperidin-3-yl]amino}-6,7-dihydro-5H-cyclopenta[d]pyridazin-1-yl)-5-(trifluoromethyl)phenol

01.2: 13 residues within 4Å: Chain A: A.227, A.228, F.410, I.411, V.414, T.439, Y.443, T.524, F.575, R.578, L.628, E.629, Y.632 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.227, A:F.410, A:I.411, A:I.411, A:T.439, A:F.575, A:L.628, A:Y.632 Hydrogen bonds: A:R.578 Salt bridges: A:E.629

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mammoliti, O. et al., Discovery of Potent and Brain-Penetrant Bicyclic NLRP3 Inhibitors with Peripheral and Central In Vivo Activity. J.Med.Chem. (2025)

Release Date

2025-02-26

Peptides

NACHT, LRR and PYD domains-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

NACHT, LRR and PYD domains-containing protein 3

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