SMTL ID : 9mu8.1

Structure of a native Drosophila melanogaster Pol II Elongation Complex without Rpb4/Rpb7 stalk

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.37 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.61, C.64, C.71, H.74 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.61, A:C.64, A:C.71, A:H.74 ZN.2: 4 residues within 4Å: Chain A: C.101, C.104, C.144, C.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.101, A:C.104, A:C.144, A:C.170 ZN.3: 4 residues within 4Å: Chain B: C.1109, C.1112, C.1127, C.1130 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1109, B:C.1112, B:C.1127, B:C.1130 ZN.4: 4 residues within 4Å: Chain C: C.87, C.89, C.93, C.96 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.87, C:C.89, C:C.93, C:C.96 ZN.5: 4 residues within 4Å: Chain F: C.8, C.11, C.30, C.33 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.8, F:C.11, F:C.30, F:C.33 ZN.6: 4 residues within 4Å: Chain F: C.77, C.80, C.105, C.110 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.77, F:C.80, F:C.105, F:C.110 ZN.7: 4 residues within 4Å: Chain G: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.7, G:C.10, G:C.44, G:C.45 ZN.8: 4 residues within 4Å: Chain I: C.7, C.10, C.24, C.27 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.7, I:C.10, I:C.24, I:C.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venette-Smith, N.L. et al., Structural Characterization of Native RNA Polymerase II Transcription Complexes in Drosophila melanogaster. To Be Published

Release Date

2025-05-14

Peptides

DNA-directed RNA polymerase II subunit RPB1: A
DNA-directed RNA polymerase II subunit RPB2: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerases I, II, and III subunit RPABC2: D
DNA-directed RNA polymerases I, II, and III subunit RPABC3: E
DNA-directed RNA polymerase II subunit RPB9: F
DNA-directed RNA polymerases I, II, and III subunit RPABC5: G
DNA-directed RNA polymerase II subunit RPB11: H
DNA-directed RNA polymerase II subunit RPB12: I
RPB5 homolog: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
F

E
H

F
I

G
J

H
K

I
L

M
E

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase II subunit RPB2

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerase II subunit RPB12

RPB5 homolog

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